View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_high_44 (Length: 427)

Name: NF20262_high_44
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_high_44
NF20262_high_44
[»] chr2 (1 HSPs)
chr2 (7-427)||(38830450-38830876)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 427
Target Start/End: Original strand, 38830450 - 38830876
Alignment:
Q  7 tactttaacctattatgcatggaacaaacaaacacaaaagaggaacagacnnnnnnnnncaactctgaggagataatccttagatctcga-cattgattc 105  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||          |||||| |||||||||||||||||||||||| |||||||||    
T  38830450 tactttaacctatcatgcatggaacaaacaaacacaaaagaggaacaga---aaaaaaacaactccgaggagataatccttagatctcgatcattgattc 38830546  T
Q  106 a--------gtgtctaaa-ttaaacaatcaatttcacgtttagaagatatgtctgttaatttagattgattgattgagatttattttatcacgcaatcac 196  Q
    |        ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38830547 aagatcaaagtgtctaaaattaaacaatcaatttcacggttagaagatatctctgttaatttagattgattgattgagatttattttatcacgcaatcac 38830646  T
Q  197 aacaaaatctattttcaaaattgtataatatatgttgagagtgattaactctttaaaattgtaaggagttattctaaaaatagcttaatttacaac--aa 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  38830647 aacaaaatctattttcaaaattgtataatatatgttgagagtgattaactctttaaaattgtaaggagttattctaaaaatagcttaatttacaacaaaa 38830746  T
Q  295 cnnnnnnnctaccaaaaatagttattccaacaataaggttatgagatatatctctctcttgcttacagtatacccgtgagttcttttgcattcaaaaact 394  Q
            |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38830747 aaaaaaaactaccaaaaatagttattccaac---aaggttatgagatatatctctctcttgcttacagtatacccgtgagttcttttgcattcaaaaact 38830843  T
Q  395 tgttaagactaaatataaagatagcgacagatc 427  Q
    |||||||||||||||||||||||||||||||||    
T  38830844 tgttaagactaaatataaagatagcgacagatc 38830876  T

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