View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_47 (Length: 413)
Name: NF20262_high_47
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_47 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 413
Target Start/End: Original strand, 11789543 - 11789945
Alignment:
| Q |
10 |
ataattctataaagatacacagtcaaagataatactccattcatttcatggctttctagtggggacaaattggtaggtcctcatctcaacgtcactcact |
109 |
Q |
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| T |
11789543 |
ataattctataaagatacacagtcaaagataatactccattcatttcatggctttctagtggggacaaactggtaggtcctcatctcaacgtcactcact |
11789642 |
T |
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| Q |
110 |
cataggtacatttgttacgcaagtttaatggcaagcattacttttgtaatacttgtttgctaagcagaaatatccttcgcccaacttatagattgtgtag |
209 |
Q |
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| T |
11789643 |
cataggtacatttgttacgcaagtttaatggcaagcattaattttgtaatacttgtttgttaagcagaaatatccctcgcccaacttatagattgtgtag |
11789742 |
T |
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| Q |
210 |
aagtgtggtttaattaagttgtaggcacaaattctatggtctagtatgcgctaaacataaaatgcatggaaaactaaaagggggaaagaagaacaatctt |
309 |
Q |
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| T |
11789743 |
aagtgtggtttaattaagctgtaggcacaaattctatggtctagtatgtgctaaacataaagtgtatggaaaactaaaa-ggggaaagaagaacaatctt |
11789841 |
T |
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| Q |
310 |
atgctaagcaataagagattaaaatgaattatattaattaatgtctgatagattaagcataaggagtgtcgaaaaaattaagatgaaaaagtcaaattac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
11789842 |
atgctaagcaataagagattaaaatgaattatattaattaatgtgtgatagattaagcataaggagtgtcgaaaaaattaggatgaaaaagtcaagttac |
11789941 |
T |
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| Q |
410 |
aaca |
413 |
Q |
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| T |
11789942 |
aaca |
11789945 |
T |
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