View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_high_53 (Length: 394)

Name: NF20262_high_53
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_high_53
NF20262_high_53
[»] scaffold0636 (1 HSPs)
scaffold0636 (19-384)||(7680-8045)
[»] chr6 (5 HSPs)
chr6 (181-316)||(1485125-1485259)
chr6 (242-332)||(882719-882808)
chr6 (289-332)||(29240415-29240458)
chr6 (292-332)||(34620968-34621008)
chr6 (292-332)||(34748405-34748445)
[»] chr3 (7 HSPs)
chr3 (229-332)||(35264374-35264476)
chr3 (292-332)||(41591316-41591356)
chr3 (292-332)||(51285652-51285692)
chr3 (294-332)||(41596112-41596150)
chr3 (239-333)||(46853496-46853589)
chr3 (292-332)||(3776604-3776644)
chr3 (296-332)||(7012670-7012706)
[»] chr2 (7 HSPs)
chr2 (293-332)||(15220824-15220863)
chr2 (226-332)||(44439271-44439376)
chr2 (287-332)||(3853930-3853975)
chr2 (293-326)||(4908873-4908906)
chr2 (296-332)||(23359963-23359999)
chr2 (292-332)||(28206759-28206799)
chr2 (292-332)||(40401606-40401646)
[»] chr7 (9 HSPs)
chr7 (292-330)||(41010038-41010076)
chr7 (299-332)||(34439982-34440015)
chr7 (292-370)||(40561682-40561761)
chr7 (296-332)||(29829332-29829368)
chr7 (296-332)||(15311238-15311274)
chr7 (292-332)||(33853447-33853487)
chr7 (252-332)||(38123629-38123709)
chr7 (292-332)||(40491660-40491700)
chr7 (292-332)||(45557447-45557487)
[»] chr5 (3 HSPs)
chr5 (295-332)||(29922985-29923022)
chr5 (292-332)||(4306594-4306634)
chr5 (296-332)||(22811070-22811106)
[»] scaffold0361 (1 HSPs)
scaffold0361 (252-332)||(14077-14157)
[»] chr1 (6 HSPs)
chr1 (253-317)||(52263625-52263689)
chr1 (293-332)||(33693085-33693124)
chr1 (292-330)||(213246-213284)
chr1 (292-329)||(48635158-48635195)
chr1 (296-332)||(4347028-4347064)
chr1 (194-246)||(50296468-50296520)
[»] chr8 (5 HSPs)
chr8 (302-332)||(36779435-36779465)
chr8 (294-330)||(8693850-8693886)
chr8 (296-332)||(19649224-19649260)
chr8 (300-332)||(37159439-37159471)
chr8 (282-326)||(43492206-43492250)
[»] chr4 (7 HSPs)
chr4 (229-332)||(33843997-33844101)
chr4 (296-333)||(22699757-22699794)
chr4 (296-333)||(22980736-22980773)
chr4 (296-333)||(22994323-22994360)
chr4 (292-324)||(8604593-8604625)
chr4 (292-332)||(33843793-33843833)
chr4 (292-332)||(36639877-36639917)


Alignment Details
Target: scaffold0636 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 8045 - 7680
Alignment:
Q  19 aagattagtaggcccttttgtcgaagatgaagacaagaaacagatgacatgaatttgcatctgcaggatttttgtgaccgtaggaaaataagaaaaatag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8045 aagattagtaggcccttttgtcgaagatgaagacaagaaacagatgacatgaatttgcatctgcaggatttttgtgaccgtaggaaaataagaaaaatag 7946  T
Q  119 ttttagtgtaggtttggtttcacttttagtgtatgtttaattctcatgtttgggttacatgtttgagtagaaatgattttgcctttagaattaattatat 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7945 ttttagtgtaggtttggtttcacttttagtgtatgtttaattatcatgcttgggttacatgtttgagtagaaatgattttgcctctagaattaattatat 7846  T
Q  219 ttgactttaaaaattagagattttgattcaagaaattgattttaacattcaaaattattgtataacttaattatacatgaatgtatccaaacataaatta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7845 ttgactttaaaaattagagattttgattcaagaaattgattttaacattcaaaattattgtataacttaattatacacgaatgtatccaaacataaatta 7746  T
Q  319 ctttacattcaactttttatacctagaatcaatttacttaaaatcaatttttaaagcgcacctttg 384  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7745 ctttacattcaactttttatagctagaatcaatttacttaaaatcaatttttaaagcgcacctttg 7680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 1485259 - 1485125
Alignment:
Q  181 ttgagtagaaatgattttgcctttagaattaattatatttgactttaaaaattagagattttgattcaagaaattgattttaacattcaaaattattgta 280  Q
    |||||||||| | ||||||||||||||||| ||| || |||| | || ||||| ||| ||||||||| || |||||||||||||| ||||| |||||||     
T  1485259 ttgagtagaattaattttgcctttagaattgattctacttgaatctagaaattggagcttttgattctag-aattgattttaacactcaaatttattgtt 1485161  T
Q  281 taacttaattatacatgaatgtatccaaacataaat 316  Q
     |||| | || ||||| | ||||||||||| |||||    
T  1485160 caactcacttttacataagtgtatccaaacgtaaat 1485125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 332
Target Start/End: Original strand, 882719 - 882808
Alignment:
Q  242 tgattcaagaaattgattttaacattcaaaattattgtataacttaattatacatgaatgtatccaaacataaattactttacattcaact 332  Q
    |||||||| ||||||||||| ||||||||| ||||||| ||||| | || | ||||||||||||||||||||||| | ||||| |||||||    
T  882719 tgattcaa-aaattgatttttacattcaaatttattgtttaactcacttttgcatgaatgtatccaaacataaatcattttaccttcaact 882808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 29240458 - 29240415
Alignment:
Q  289 ttatacatgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||||||||||| |||||||||||||| | |||||||||||||    
T  29240458 ttatacatgaatgcatccaaacataaatgaatttacattcaact 29240415  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 34620968 - 34621008
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||| ||||||||||||||||||| ||||||| |||||||    
T  34620968 tacataaatgtatccaaacataaatcactttaccttcaact 34621008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 34748405 - 34748445
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||| ||||||||||||||||||| ||||||| |||||||    
T  34748405 tacataaatgtatccaaacataaatcactttaccttcaact 34748445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 332
Target Start/End: Complemental strand, 35264476 - 35264374
Alignment:
Q  229 aaattagagattttgattcaagaaattgattttaacattcaaaattattgtataacttaattatacatgaatgtatccaaacataaattactttacattc 328  Q
    ||||||||| ||||||||| |||| |||||||||||| | ||| |||||||  || | | || |||||||||||| |||||||||| | ||||||| |||    
T  35264476 aaattagagcttttgattctagaa-ttgattttaacacttaaatttattgttcaagtcatttttacatgaatgtacccaaacataactcactttactttc 35264378  T
Q  329 aact 332  Q
    ||||    
T  35264377 aact 35264374  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 41591356 - 41591316
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  41591356 tacatgaatgtatccaaacataaatcactttaaattcaact 41591316  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 51285652 - 51285692
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  51285652 tacatgaatgtatccaagcatgaattactttacattcaact 51285692  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Complemental strand, 41596150 - 41596112
Alignment:
Q  294 catgaatgtatccaaacataaattactttacattcaact 332  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  41596150 catgaatgtatccaaacagaaatcactttacattcaact 41596112  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 46853589 - 46853496
Alignment:
Q  239 ttttgattcaagaaattgattttaacattcaaaattattgtataacttaattatacatgaatgtatccaaacataaattactttacattcaactt 333  Q
    ||||||||| |||| |||||||||||| ||||| |||||||  |||| | || ||||| ||| |||||  |||||||| ||||||| ||||||||    
T  46853589 ttttgattctagaa-ttgattttaacactcaaatttattgttcaactcacttttacataaatatatcctgacataaatcactttaccttcaactt 46853496  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 3776604 - 3776644
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||| ||||||||||| ||||||| |||||||||||||||    
T  3776604 tacatcaatgtatccaagcataaatcactttacattcaact 3776644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 7012670 - 7012706
Alignment:
Q  296 tgaatgtatccaaacataaattactttacattcaact 332  Q
    |||| |||||||||||||||| |||||||||||||||    
T  7012670 tgaaggtatccaaacataaatcactttacattcaact 7012706  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 15220863 - 15220824
Alignment:
Q  293 acatgaatgtatccaaacataaattactttacattcaact 332  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  15220863 acatgaatgtatccaaacataaatcactttacattcaact 15220824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 332
Target Start/End: Original strand, 44439271 - 44439376
Alignment:
Q  226 taaaaattagagattttgattcaagaaattgattttaacattcaaaattattgtataacttaattatacatgaatgtatccaaacataaattactttaca 325  Q
    ||||| || ||| ||||||||| | ||||||||||||||| ||||| |||||||  |||| | || ||||| ||  ||||||||||||||| ||||||||    
T  44439271 taaaatttggagcttttgattcta-aaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaaacataaatcactttaca 44439369  T
Q  326 ttcaact 332  Q
    || ||||    
T  44439370 tttaact 44439376  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 3853930 - 3853975
Alignment:
Q  287 aattatacatgaatgtatccaaacataaattactttacattcaact 332  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||    
T  3853930 aattttacatgaatgtatccaaacataaatcaatttacattcaact 3853975  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 4908873 - 4908906
Alignment:
Q  293 acatgaatgtatccaaacataaattactttacat 326  Q
    |||||||||||||||||||||||| |||||||||    
T  4908873 acatgaatgtatccaaacataaatcactttacat 4908906  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 23359999 - 23359963
Alignment:
Q  296 tgaatgtatccaaacataaattactttacattcaact 332  Q
    |||| |||||||||||||||| |||||||||||||||    
T  23359999 tgaaggtatccaaacataaatcactttacattcaact 23359963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 28206759 - 28206799
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact 332  Q
    |||||||||||| | |||||||||||| |||||||||||||    
T  28206759 tacatgaatgtacctaaacataaattaatttacattcaact 28206799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 40401646 - 40401606
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||||||||||||||||||||||||| | ||| |||||||    
T  40401646 tacatgaatgtatccaaacataaattagtctaccttcaact 40401606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 41010038 - 41010076
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaa 330  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  41010038 tacatgaatgtatccaaacataaattactttaccttcaa 41010076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 34439982 - 34440015
Alignment:
Q  299 atgtatccaaacataaattactttacattcaact 332  Q
    ||||||||||||||||||||||||||||||||||    
T  34439982 atgtatccaaacataaattactttacattcaact 34440015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 40561761 - 40561682
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact--ttttatacctagaatcaatttacttaaaatcaattttt 370  Q
    ||||||||||||||||||||||||| ||||||| |||||||   ||| || |||||||||||| ||| |||||||| ||||    
T  40561761 tacatgaatgtatccaaacataaatcactttactttcaactcaattttta-ctagaatcaattcactcaaaatcaactttt 40561682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 29829368 - 29829332
Alignment:
Q  296 tgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||||||||||||||||||| |||||||||||||||    
T  29829368 tgaatgtatccaaacataaatcactttacattcaact 29829332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 15311274 - 15311238
Alignment:
Q  296 tgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  15311274 tgaatgtatccaaacataaatcactatacattcaact 15311238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 33853487 - 33853447
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||||||||||||||||||||||| ||||||  |||||||    
T  33853487 tacatgaatgtatccaaacataaatcactttagcttcaact 33853447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 38123709 - 38123629
Alignment:
Q  252 aattgattttaacattcaaaattattgtataacttaattatacatgaatgtatccaaacataaattactttacattcaact 332  Q
    |||||||||| ||| ||||| ||||||   |||| | || ||||||||||| ||| |||| |||||||||||| |||||||    
T  38123709 aattgatttttacactcaaatttattggtcaactcacttttacatgaatgtgtccgaacacaaattactttaccttcaact 38123629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 40491660 - 40491700
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact 332  Q
    |||||||||||||||||| |||||| ||||||| |||||||    
T  40491660 tacatgaatgtatccaaaaataaatcactttaccttcaact 40491700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 45557447 - 45557487
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact 332  Q
    |||||||||||||||||||| |||| ||||||| |||||||    
T  45557447 tacatgaatgtatccaaacacaaatcactttaccttcaact 45557487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 29922985 - 29923022
Alignment:
Q  295 atgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  29922985 atgaatgtatccaaacataaattacttcacattcaact 29923022  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 4306594 - 4306634
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||||||||||||||||||||||| | |||||||||||||    
T  4306594 tacatgaatgtatccaaacataaatcattttacattcaact 4306634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 22811070 - 22811106
Alignment:
Q  296 tgaatgtatccaaacataaattactttacattcaact 332  Q
    |||| |||||||||||||||| |||||||||||||||    
T  22811070 tgaaggtatccaaacataaatcactttacattcaact 22811106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 14157 - 14077
Alignment:
Q  252 aattgattttaacattcaaaattattgtataacttaattatacatgaatgtatccaaacataaattactttacattcaact 332  Q
    |||||||||| ||| ||||| ||||| |  |||| | ||  |||||||||||||||||||||||| ||||||| |||||||    
T  14157 aattgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaact 14077  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 52263689 - 52263625
Alignment:
Q  253 attgattttaacattcaaaattattgtataacttaattatacatgaatgtatccaaacataaatt 317  Q
    ||||||||| ||| ||||| ||||||| ||||| | || ||||| ||||||||||||||||||||    
T  52263689 attgatttttacactcaaatttattgtttaactcagttttacattaatgtatccaaacataaatt 52263625  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 33693085 - 33693124
Alignment:
Q  293 acatgaatgtatccaaacataaattactttacattcaact 332  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  33693085 acatgaatgtatccaaacataaatcactttacgttcaact 33693124  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 213284 - 213246
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaa 330  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  213284 tacatgcatgtatccaaacataaatcactttacattcaa 213246  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 48635195 - 48635158
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattca 329  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  48635195 tacatgaatgtatccaaacataaatcactttccattca 48635158  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 4347028 - 4347064
Alignment:
Q  296 tgaatgtatccaaacataaattactttacattcaact 332  Q
    |||| |||||||||||||||| |||||||||||||||    
T  4347028 tgaaggtatccaaacataaatcactttacattcaact 4347064  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 50296520 - 50296468
Alignment:
Q  194 attttgcctttagaattaattatatttgactttaaaaattagagattttgatt 246  Q
    |||||||||||| |||| |||||||||||  ||| ||||||||| ||||||||    
T  50296520 attttgcctttaaaattgattatatttgaaattataaattagagtttttgatt 50296468  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 332
Target Start/End: Original strand, 36779435 - 36779465
Alignment:
Q  302 tatccaaacataaattactttacattcaact 332  Q
    |||||||||||||||||||||||||||||||    
T  36779435 tatccaaacataaattactttacattcaact 36779465  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 8693850 - 8693886
Alignment:
Q  294 catgaatgtatccaaacataaattactttacattcaa 330  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  8693850 catgaatttatccaaacataaattactatacattcaa 8693886  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 19649224 - 19649260
Alignment:
Q  296 tgaatgtatccaaacataaattactttacattcaact 332  Q
    |||| |||||||||||||||| |||||||||||||||    
T  19649224 tgaaggtatccaaacataaatcactttacattcaact 19649260  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 332
Target Start/End: Complemental strand, 37159471 - 37159439
Alignment:
Q  300 tgtatccaaacataaattactttacattcaact 332  Q
    |||||||||||||| ||||||||||||||||||    
T  37159471 tgtatccaaacatatattactttacattcaact 37159439  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 43492250 - 43492206
Alignment:
Q  282 aacttaattatacatgaatgtatccaaacataaattactttacat 326  Q
    |||||| || ||||||||||||||||||||||||| | |||||||    
T  43492250 aacttacttttacatgaatgtatccaaacataaatcattttacat 43492206  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 332
Target Start/End: Original strand, 33843997 - 33844101
Alignment:
Q  229 aaattagagattttgattcaagaaattgattttaacattcaaaattattgtataacttaattatacatga--atgtatccaaacataaattactttacat 326  Q
    ||||| ||| ||||||||| | ||||||||||||||| ||||| |||||||  |||||| || |||||||  || | |||||||| |||| | |||||||    
T  33843997 aaattggagcttttgattcta-aaattgattttaacactcaaatttattgttcaacttatttttacatgaatatctctccaaacacaaataattttacat 33844095  T
Q  327 tcaact 332  Q
    ||||||    
T  33844096 tcaact 33844101  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 22699757 - 22699794
Alignment:
Q  296 tgaatgtatccaaacataaattactttacattcaactt 333  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  22699757 tgaaggtatccaaacataaatcactttacattcaactt 22699794  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 22980773 - 22980736
Alignment:
Q  296 tgaatgtatccaaacataaattactttacattcaactt 333  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  22980773 tgaaggtatccaaacataaatcactttacattcaactt 22980736  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 22994360 - 22994323
Alignment:
Q  296 tgaatgtatccaaacataaattactttacattcaactt 333  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  22994360 tgaaggtatccaaacataaatcactttacattcaactt 22994323  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 8604625 - 8604593
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttac 324  Q
    ||||||||||||||||||||||||| |||||||    
T  8604625 tacatgaatgtatccaaacataaatcactttac 8604593  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 33843793 - 33843833
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||||||| ||||||||||||||| ||||||||| |||||    
T  33843793 tacatgaatatatccaaacataaatcactttacatccaact 33843833  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 36639877 - 36639917
Alignment:
Q  292 tacatgaatgtatccaaacataaattactttacattcaact 332  Q
    ||||||||||||||||||||||||| ||||||  |||||||    
T  36639877 tacatgaatgtatccaaacataaatcactttatcttcaact 36639917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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