View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_high_56 (Length: 386)

Name: NF20262_high_56
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_high_56
NF20262_high_56
[»] chr3 (5 HSPs)
chr3 (22-365)||(36280768-36281113)
chr3 (22-306)||(7129924-7130211)
chr3 (22-311)||(6820621-6820907)
chr3 (264-299)||(48352158-48352193)
chr3 (251-300)||(26955807-26955856)
[»] chr8 (2 HSPs)
chr8 (29-365)||(33178045-33178381)
chr8 (244-301)||(15038747-15038804)
[»] chr4 (2 HSPs)
chr4 (22-160)||(1072468-1072606)
chr4 (237-306)||(1072686-1072755)
[»] chr1 (3 HSPs)
chr1 (249-365)||(16305297-16305411)
chr1 (264-299)||(48710362-48710397)
chr1 (264-300)||(13216975-13217011)
[»] chr5 (2 HSPs)
chr5 (264-299)||(27515880-27515915)
chr5 (264-300)||(42918027-42918063)
[»] chr6 (1 HSPs)
chr6 (244-309)||(2845423-2845488)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 22 - 365
Target Start/End: Complemental strand, 36281113 - 36280768
Alignment:
Q  22 gggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtgatg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36281113 gggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataaaattagttggaagatgtgtgatg 36281014  T
Q  122 ggaattctactttgtttttgttagattcctgattggatgatatgtccctgagatac--ttatagaagattatacgagttagctgatataaattgacaaat 219  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  36281013 ggaattttactttgtttttgttagatccctgattggatgatatgcccctgagatacacttatagaagattatacgagttagctgatataaattgacaaat 36280914  T
Q  220 gtagagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactg 319  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  36280913 gtagagaatgtgttcattatggggtggggagtgaacggtgaggagtggaagtggcgtaggaggttatttgcttgggaggaagagttggtgagagagagtg 36280814  T
Q  320 tgttgggcggttaattccaatggttttacaggttggatcagttgat 365  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||    
T  36280813 tgttgggcggctaactccaatggttttacaggttggatcagttgat 36280768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 22 - 306
Target Start/End: Complemental strand, 7130211 - 7129924
Alignment:
Q  22 gggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtgatg 121  Q
    |||| ||||||| |||||||||||| |||||| ||| ||||||||||||||||||||| || |||| |||||||||| ||||||  |||  || ||||||    
T  7130211 gggtcggtgtggcggcagactatgaaaagtataagaaagggcgtgggtcaggtggatgttgggtggttgagagataacattagtcagaacgtgggtgatg 7130112  T
Q  122 ggaattctactttgtttttgttagattcctgattggatgatatgtccctga--gatacttatagaagattatacgagttagctgat-ataaattgacaaa 218  Q
     || ||||||| |||||| ||||||| |||| |||| || ||||  |||||  || | || | |||||||||| |||||||| ||| | |||||| |||     
T  7130111 cgacttctactatgttttggttagatccctggttgggtggtatgctcctgaaggagagttttggaagattatatgagttagcggataaaaaattggcaat 7130012  T
Q  219 tgtagagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttg 306  Q
    ||||||| || |||| ||||| |||||||| | ||| ||||||  ||| |||||| |||||||||| ||| ||||||||||| |||||    
T  7130011 tgtagagcatatgtttattatagggtggggagagaatggtgaggcgtgtaagtggtgtaggaggttgttttcttgggaggaagagttg 7129924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 6820621 - 6820907
Alignment:
Q  22 gggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtgatg 121  Q
    |||| |||||| ||||| | |||||||||||||  |||||| |||||||||| || ||||       |||||||||| ||||||| |||  || ||||||    
T  6820621 gggttggtgtgatggcatattatgagaagtatctaagagggtgtgggtcaggcgggtggt-------tgagagataacattagttagaacgtgggtgatg 6820713  T
Q  122 ggaattctactttgtttttgttagattcctgatt-ggatgatatgtccctgag--atacttatagaagattatacgagttagctgata-taaattgacaa 217  Q
    |||| |||||| |||||| ||||||| | || || ||||| | || || ||||  ||| ||||||||||||||| ||||||||||| | ||||||| |||    
T  6820714 ggaactctactctgttttggttagatccttggtttggatggtttgcccttgagggatagttatagaagattatatgagttagctgacaataaattggcaa 6820813  T
Q  218 atgtagagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgag 311  Q
     |||||||||| |||||| ||   | ||||| |||||||||||| ||||||||| ||||| |||||||||||||||| ||||| ||||||||||    
T  6820814 ctgtagagaatatgttcactacatgatggggagtgaacggtgaggagtggaagtagcgtatgaggttatttgcttggaaggaagagttggtgag 6820907  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 299
Target Start/End: Original strand, 48352158 - 48352193
Alignment:
Q  264 gtggaagtggcgtaggaggttatttgcttgggagga 299  Q
    |||||||||||| |||||||||||||||||||||||    
T  48352158 gtggaagtggcggaggaggttatttgcttgggagga 48352193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 26955856 - 26955807
Alignment:
Q  251 tgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaa 300  Q
    |||| ||||||| ||| |||||||||| |||||| |||||||||||||||    
T  26955856 tgaatggtgagacgtgaaagtggcgtaagaggttgtttgcttgggaggaa 26955807  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 365
Target Start/End: Complemental strand, 33178381 - 33178045
Alignment:
Q  29 tgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtgatgggaattc 128  Q
    |||||||||||| ||| |||| ||| |||||||  ||||| || |||||||| | |||| | || |||||||||||  ||||| || | ||||| || ||    
T  33178381 tgtggtggcagagtataagaaatattagagaggaggtgggacaagtggatggagggtggttaagggataatattagccggaaggtgggggatggaaactc 33178282  T
Q  129 tactttgtttttgttagattcctgattggatgatatgtccctga--gatacttatagaagattatacgagttagctgatataaattgacaaatgtagaga 226  Q
    |||| |||||| | ||||| | || ||||||| |||| | ||||  |||  || |  |||||| ||||||||| |||  |||| ||||||| ||| | |     
T  33178281 tactctgttttgggtagatccgtggttggatggtatgcctctgaaggattgttttcaaagattttacgagttaactgcaataagttgacaactgtggtgg 33178182  T
Q  227 atgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgttggg 326  Q
    || ||||   ||||||||||||| |||| || |||  |||||||||||||  |||||| || |||||||||||| |||||||||| |||  ||||| |||    
T  33178181 atatgttttctatggggtgggggctgaatggagaggcgtggaagtggcgtcagaggttgttcgcttgggaggaagagttggtgagggag--tgtgtaggg 33178084  T
Q  327 cggttaattccaatggttttacaggttggatcagttgat 365  Q
    ||  ||| |||| | ||||||||||||||||||| ||||    
T  33178083 cgtctaactccagttgttttacaggttggatcaggtgat 33178045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 15038804 - 15038747
Alignment:
Q  244 tggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaa 301  Q
    ||||| ||||||||||||  |||||||||| |||||| ||| ||||||||||||||||    
T  15038804 tggggagtgaacggtgagccgtggaagtggtgtaggacgttgtttgcttgggaggaaa 15038747  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 1072468 - 1072606
Alignment:
Q  22 gggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtgatg 121  Q
    |||| ||| ||||||||||||||||||| ||| |||||||| || || || |||||||| | ||| |||||||||||||||||| ||||| || || |||    
T  1072468 gggtcggtatggtggcagactatgagaaatattagagagggagtaggacacgtggatggagggtgactgagagataatattagtcggaaggtgggtaatg 1072567  T
Q  122 ggaattctactttgtttttgttagattcctgattggatg 160  Q
     ||||| ||||||||||| |||||||  ||| |||||||    
T  1072568 agaattttactttgttttggttagatctctggttggatg 1072606  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 1072686 - 1072755
Alignment:
Q  237 tatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttg 306  Q
    |||||||||||| ||||| ||||||  ||| ||||| |||||||||||| | | |||||||||| |||||    
T  1072686 tatggggtggggtgtgaatggtgaggcgtgcaagtgtcgtaggaggttactcgtttgggaggaagagttg 1072755  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 365
Target Start/End: Complemental strand, 16305411 - 16305297
Alignment:
Q  249 ggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgttgggcggttaattccaatggttttac 348  Q
    |||||| ||||||  |||||||| | ||||||||||||| |||||||||||| ||||| |||| |||  |||||| ||| | ||| |  | ||||||| |    
T  16305411 ggtgaatggtgaggtgtggaagttgtgtaggaggttattcgcttgggaggaagagttgctgagggag--tgtgttaggcagctaacttgagtggttttgc 16305314  T
Q  349 aggttggatcagttgat 365  Q
    |||||||| ||||||||    
T  16305313 aggttggaacagttgat 16305297  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 299
Target Start/End: Complemental strand, 48710397 - 48710362
Alignment:
Q  264 gtggaagtggcgtaggaggttatttgcttgggagga 299  Q
    ||||||||||||||||||||||||||| ||||||||    
T  48710397 gtggaagtggcgtaggaggttatttgcgtgggagga 48710362  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 13217011 - 13216975
Alignment:
Q  264 gtggaagtggcgtaggaggttatttgcttgggaggaa 300  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  13217011 gtggaagtggagtaggaggttattagcttgggaggaa 13216975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 299
Target Start/End: Complemental strand, 27515915 - 27515880
Alignment:
Q  264 gtggaagtggcgtaggaggttatttgcttgggagga 299  Q
    ||||||||||||||||||||||||||| ||||||||    
T  27515915 gtggaagtggcgtaggaggttatttgcgtgggagga 27515880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 42918027 - 42918063
Alignment:
Q  264 gtggaagtggcgtaggaggttatttgcttgggaggaa 300  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  42918027 gtggaaatggcggaggaggttatttgcttgggaggaa 42918063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 2845488 - 2845423
Alignment:
Q  244 tggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtg 309  Q
    ||||| ||||||||||||| | |||||||||| ||||| || |||||||| || || |||||||||    
T  2845488 tggggagtgaacggtgagacgaggaagtggcgaaggagattgtttgcttgagatgagaagttggtg 2845423  T

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