View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_high_6 (Length: 699)

Name: NF20262_high_6
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_high_6
NF20262_high_6
[»] chr8 (11 HSPs)
chr8 (177-448)||(10679942-10680223)
chr8 (16-211)||(10680263-10680467)
chr8 (493-610)||(10679779-10679897)
chr8 (20-72)||(10681926-10681978)
chr8 (16-64)||(17963460-17963508)
chr8 (611-645)||(1669119-1669153)
chr8 (611-645)||(16659913-16659947)
chr8 (610-648)||(32382405-32382443)
chr8 (610-648)||(32436360-32436398)
chr8 (611-645)||(38520297-38520331)
chr8 (29-74)||(4390754-4390799)
[»] chr1 (14 HSPs)
chr1 (16-90)||(46683595-46683670)
chr1 (16-75)||(2228097-2228156)
chr1 (16-75)||(46683379-46683438)
chr1 (16-75)||(47477311-47477370)
chr1 (611-653)||(3288021-3288063)
chr1 (551-606)||(4267848-4267903)
chr1 (551-610)||(32161730-32161789)
chr1 (615-652)||(20727825-20727862)
chr1 (27-63)||(680662-680698)
chr1 (19-75)||(5153319-5153375)
chr1 (16-75)||(47478620-47478679)
chr1 (25-63)||(49617161-49617199)
chr1 (25-75)||(51745846-51745896)
chr1 (608-653)||(5733846-5733891)
[»] chr5 (13 HSPs)
chr5 (17-75)||(34002964-34003022)
chr5 (25-75)||(13828928-13828978)
chr5 (17-64)||(37987514-37987561)
chr5 (608-651)||(43300738-43300781)
chr5 (611-651)||(41958107-41958147)
chr5 (28-63)||(13614818-13614853)
chr5 (611-650)||(18739128-18739167)
chr5 (611-645)||(3175257-3175291)
chr5 (611-653)||(13626766-13626808)
chr5 (25-63)||(13827617-13827655)
chr5 (25-75)||(19685674-19685724)
chr5 (610-647)||(22270199-22270236)
chr5 (611-648)||(38394981-38395018)
[»] chr4 (22 HSPs)
chr4 (16-75)||(4349932-4349991)
chr4 (19-75)||(3334690-3334746)
chr4 (16-75)||(55515551-55515611)
chr4 (16-63)||(3087944-3087991)
chr4 (17-75)||(3086437-3086495)
chr4 (611-653)||(9816458-9816500)
chr4 (25-75)||(10224431-10224481)
chr4 (25-75)||(23356630-23356680)
chr4 (611-653)||(33753007-33753049)
chr4 (26-75)||(55514755-55514804)
chr4 (25-61)||(33953071-33953107)
chr4 (610-653)||(16401265-16401308)
chr4 (25-75)||(19137819-19137869)
chr4 (611-645)||(23217291-23217325)
chr4 (25-75)||(23357942-23357992)
chr4 (550-580)||(24935321-24935351)
chr4 (611-652)||(29947674-29947716)
chr4 (16-61)||(25728727-25728772)
chr4 (611-652)||(38115928-38115969)
chr4 (611-647)||(3186696-3186732)
chr4 (26-74)||(10231220-10231268)
chr4 (611-647)||(20038724-20038760)
[»] chr2 (9 HSPs)
chr2 (16-75)||(14146956-14147015)
chr2 (18-75)||(14145593-14145650)
chr2 (27-63)||(34880445-34880481)
chr2 (610-645)||(3934364-3934399)
chr2 (614-653)||(41318321-41318360)
chr2 (29-75)||(36626423-36626469)
chr2 (611-645)||(38974743-38974777)
chr2 (30-75)||(33373168-33373213)
chr2 (30-75)||(34506375-34506420)
[»] chr7 (8 HSPs)
chr7 (19-72)||(43962768-43962821)
chr7 (609-652)||(8363951-8363994)
chr7 (16-61)||(18655135-18655180)
chr7 (611-652)||(38871472-38871513)
chr7 (611-651)||(44660873-44660913)
chr7 (28-75)||(46484321-46484368)
chr7 (611-652)||(21451990-21452031)
chr7 (25-61)||(46419362-46419398)
[»] scaffold0586 (2 HSPs)
scaffold0586 (25-74)||(7638-7687)
scaffold0586 (25-74)||(8684-8733)
[»] chr6 (5 HSPs)
chr6 (611-652)||(6807395-6807436)
chr6 (611-652)||(7171737-7171778)
chr6 (611-652)||(32398534-32398575)
chr6 (608-644)||(9303612-9303648)
chr6 (620-652)||(10894901-10894933)
[»] scaffold1234 (1 HSPs)
scaffold1234 (25-75)||(1801-1851)
[»] chr3 (12 HSPs)
chr3 (26-75)||(24742776-24742825)
chr3 (610-645)||(2337886-2337921)
chr3 (25-64)||(23211332-23211371)
chr3 (610-652)||(2736795-2736837)
chr3 (610-652)||(40925842-40925884)
chr3 (30-75)||(13102402-13102447)
chr3 (16-61)||(33854406-33854451)
chr3 (609-653)||(14195158-14195202)
chr3 (611-647)||(22126360-22126396)
chr3 (27-63)||(39195609-39195645)
chr3 (27-63)||(39197830-39197866)
chr3 (27-63)||(51970057-51970093)
[»] scaffold0393 (1 HSPs)
scaffold0393 (611-645)||(10626-10660)
[»] scaffold0024 (1 HSPs)
scaffold0024 (611-648)||(11736-11773)
[»] scaffold0012 (1 HSPs)
scaffold0012 (27-63)||(191199-191235)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 177 - 448
Target Start/End: Complemental strand, 10680223 - 10679942
Alignment:
Q  177 ccttcttttgtaccgcaccatagcgggggacaaagttttttcctttattctcttaaataaatgagaaatacttttatctttgtcgtttaatctcttcaga 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10680223 ccttcttttgtaccgcaccatagcgggggacaaagttttttcctttattctcttaaataaatgagaaatacttttatctttgtcgtttaatctcttcaga 10680124  T
Q  277 taattctttcaattatctttagtcttttctcagttatctttattttcttcctgctttgcgtgtgtgtgttaggatgatgattacgatgtcactt------ 370  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  10680123 taattctttcaattatctctagtcttttcccagttatctttattttcttcctgctttgcgtgtgtgtgttaggatgatgattacgatgtcactttttttc 10680024  T
Q  371 --ttttagttgataacatataa--atatatatgtacacatgttattaaatttaagttgtttaaataatcgtttagttcattg 448  Q
      ||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10680023 ttttttagttgataatatataaatatatatatgtacacatgttattaaatttaagttgtttaaataatcgtttagtttattg 10679942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 10680467 - 10680263
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtattttt----------ggcaaaaactagggcagnnnnnnnnnttctt 105  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||          ||||||||||||| |||         |||||    
T  10680467 cagagacccctgaaaaagtagaacatttatgcaatttttcgaaaaagtgaggtatttttatgtttttttggcaaaaactaggacagaaaaaaaa-ttctt 10680369  T
Q  106 taattcctcttttggtatgtttgatttgtttaaatatgaaacacaaagcagtacaaatattgaaaatatgtccttcttttgtaccgcaccatagcggggg 205  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10680368 taattcctcttttggtgtgtttgatttgtttaaatatgaaacacaaagcagtacaaatattggaaatatgtccttcttttgtaccgcaccatagcggggg 10680269  T
Q  206 acaaag 211  Q
    ||||||    
T  10680268 acaaag 10680263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 493 - 610
Target Start/End: Complemental strand, 10679897 - 10679779
Alignment:
Q  493 ttgttgtatacgtagtgaaaa-tcaaacattgcattgcatgtaaatgtcacaaaaagtatattatagtaaattttatattattttgtcttgtgcattaac 591  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10679897 ttgttgtatacgtaatgaaaaatcaaacattgcattgcatgtaaatgtcacaaaaaatatattatagtaaattttatattattttgtcttgtgcattaac 10679798  T
Q  592 aaatcaaatatggtacaat 610  Q
    |||||||||||||||||||    
T  10679797 aaatcaaatatggtacaat 10679779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 10681926 - 10681978
Alignment:
Q  20 gacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtattt 72  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  10681926 gacccctgaaaaagtagggcatttctgcaatttttcgaaaaagtggggtattt 10681978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 17963460 - 17963508
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtg 64  Q
    |||||||  |||||||||||| |||||| ||||||||||||||||||||    
T  17963460 cagagacatctgaaaaagtagggcatttgtgcaatttttcgaaaaagtg 17963508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 645
Target Start/End: Complemental strand, 1669153 - 1669119
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggc 645  Q
    |||||||||||||||||||||||||||| ||||||    
T  1669153 cagtggcggagccagacaaaaaagtttggggtggc 1669119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 645
Target Start/End: Complemental strand, 16659947 - 16659913
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggc 645  Q
    |||||||||||||||||||||||||||| ||||||    
T  16659947 cagtggcggagccagacaaaaaagtttggggtggc 16659913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 648
Target Start/End: Complemental strand, 32382443 - 32382405
Alignment:
Q  610 tcagtggcggagccagacaaaaaagtttgaggtggccgc 648  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  32382443 tcagtggcggagccagacaaaaaaatttggggtggccgc 32382405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 648
Target Start/End: Complemental strand, 32436398 - 32436360
Alignment:
Q  610 tcagtggcggagccagacaaaaaagtttgaggtggccgc 648  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  32436398 tcagtggcggagccagacaaaaaaatttggggtggccgc 32436360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 645
Target Start/End: Original strand, 38520297 - 38520331
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggc 645  Q
    |||||||||||||||||||||||||||| ||||||    
T  38520297 cagtggcggagccagacaaaaaagtttggggtggc 38520331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 4390799 - 4390754
Alignment:
Q  29 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtattttt 74  Q
    |||||||| ||||||||||||||||| | |||||||||| ||||||    
T  4390799 aaaagtagggcatttatgcaattttttgcaaaagtgaggcattttt 4390754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 46683595 - 46683670
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggta-tttttggcaaaaactagggca 90  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||| ||||||||||||||    
T  46683595 cagagacccctgaaaaagtagggcatttctgcaatttttcgaaaaagtggggtattttttgacaaaaactagggca 46683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 2228097 - 2228156
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  2228097 cagagaccccttaaaaagtagggcatttctgcaatttttcgaaaaagtgaggtatttttg 2228156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 46683438 - 46683379
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  46683438 cagagacccctgaaaaagtagggcatttctgcaatttttcgaaaaagtggggtatttttg 46683379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 47477370 - 47477311
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||| ||||||||||    
T  47477370 cagagacccctgaaaaagtagggcatttcagcaatttttcgaaaaagtggggtatttttg 47477311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 611 - 653
Target Start/End: Original strand, 3288021 - 3288063
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgccatca 653  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  3288021 cagtggcggagccagacaaaaaagtttggggtggccgccatca 3288063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 551 - 606
Target Start/End: Complemental strand, 4267903 - 4267848
Alignment:
Q  551 tattatagtaaattttatattattttgtcttgtgcattaacaaatcaaatatggta 606  Q
    ||||||||||||||||  ||||||||||| |||||||||||| |||||||| ||||    
T  4267903 tattatagtaaattttcaattattttgtcctgtgcattaacatatcaaataaggta 4267848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 551 - 610
Target Start/End: Original strand, 32161730 - 32161789
Alignment:
Q  551 tattatagtaaattttatattattttgtcttgtgcattaacaaatcaaatatggtacaat 610  Q
    |||| |||||||| ||| |||||||||||||||||||||||| |||||| | ||||||||    
T  32161730 tattgtagtaaatgttacattattttgtcttgtgcattaacatatcaaacaaggtacaat 32161789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 652
Target Start/End: Complemental strand, 20727862 - 20727825
Alignment:
Q  615 ggcggagccagacaaaaaagtttgaggtggccgccatc 652  Q
    |||||||||||||||||||||||| |||||||||||||    
T  20727862 ggcggagccagacaaaaaagtttggggtggccgccatc 20727825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 680698 - 680662
Alignment:
Q  27 gaaaaagtagagcatttatgcaatttttcgaaaaagt 63  Q
    |||||||||| ||||||||||||||||||||||||||    
T  680698 gaaaaagtagggcatttatgcaatttttcgaaaaagt 680662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 5153319 - 5153375
Alignment:
Q  19 agacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||| |||||||||||||   |||||||||||||||| ||||||| |||||||||||    
T  5153319 agacacctgaaaaagtaggatatttatgcaatttttcaaaaaagtaaggtatttttg 5153375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 47478620 - 47478679
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    ||||||||||| |||||||||  ||||| |||||||||||||||||| | | ||||||||    
T  47478620 cagagacccctaaaaaagtaggacatttctgcaatttttcgaaaaagcgggatatttttg 47478679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 49617199 - 49617161
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaagt 63  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  49617199 ctgaaaaagtagggcatttgtgcaatttttcgaaaaagt 49617161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 51745896 - 51745846
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||||||||||| ||||||  ||||||||||||||||||| || |||||||    
T  51745896 ctgaaaaagtagggcatttgcgcaatttttcgaaaaagtggggcatttttg 51745846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 653
Target Start/End: Complemental strand, 5733891 - 5733846
Alignment:
Q  608 aatcagtggcggagccagacaaaaaagtttgaggtggccgccatca 653  Q
    |||||||||||||||||||| ||||| |||| ||||||||| ||||    
T  5733891 aatcagtggcggagccagaccaaaaattttggggtggccgctatca 5733846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 34003022 - 34002964
Alignment:
Q  17 agagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  34003022 agagacccctgaaaaagtagggcatttctgcaatttttcgaaaaagtgaggtatttttg 34002964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 13828928 - 13828978
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    ||||||||||||||||||| |||||||||||||||||||| || |||||||    
T  13828928 ctgaaaaagtagagcatttttgcaatttttcgaaaaagtggggcatttttg 13828978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 37987561 - 37987514
Alignment:
Q  17 agagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtg 64  Q
    |||||| ||||||||||||| |||||| ||||||||||||||||||||    
T  37987561 agagactcctgaaaaagtagggcatttctgcaatttttcgaaaaagtg 37987514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 608 - 651
Target Start/End: Complemental strand, 43300781 - 43300738
Alignment:
Q  608 aatcagtggcggagccagacaaaaaagtttgaggtggccgccat 651  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||    
T  43300781 aatcagtggcggagccagacaaaaatgtttggggtggccgccat 43300738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 611 - 651
Target Start/End: Original strand, 41958107 - 41958147
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgccat 651  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  41958107 cagtggcggagccagacaaaaatgtttggggtggccgccat 41958147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 13614853 - 13614818
Alignment:
Q  28 aaaaagtagagcatttatgcaatttttcgaaaaagt 63  Q
    ||||||||| ||||||||||||||||||||||||||    
T  13614853 aaaaagtagggcatttatgcaatttttcgaaaaagt 13614818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 650
Target Start/End: Original strand, 18739128 - 18739167
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgcca 650  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  18739128 cagtggcggagcaagacaaaaaagtttggggtggccgcca 18739167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 645
Target Start/End: Complemental strand, 3175291 - 3175257
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggc 645  Q
    |||||||||||||||||||||||||||| ||||||    
T  3175291 cagtggcggagccagacaaaaaagtttggggtggc 3175257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 653
Target Start/End: Original strand, 13626766 - 13626808
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgccatca 653  Q
    ||||||||||||||||||||||  ||||||||||||| |||||    
T  13626766 cagtggcggagccagacaaaaatatttgaggtggccgtcatca 13626808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 13827655 - 13827617
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaagt 63  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  13827655 ctgaaaaagtagggcatttttgcaatttttcgaaaaagt 13827617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 19685674 - 19685724
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||||||||||| ||||||||||||||||| | ||||||| || |||||||    
T  19685674 ctgaaaaagtagggcatttatgcaattttttgcaaaagtggggcatttttg 19685724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 647
Target Start/End: Original strand, 22270199 - 22270236
Alignment:
Q  610 tcagtggcggagccagacaaaaaagtttgaggtggccg 647  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  22270199 tcagtggcggagccagacaaaaatgtttggggtggccg 22270236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 648
Target Start/End: Original strand, 38394981 - 38395018
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgc 648  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  38394981 cagtggcggagccagacaaaaaggtttggggtggccgc 38395018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 4349991 - 4349932
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||||||||||||||||||||  ||||| |||||||||||||||||||||| ||||||||    
T  4349991 cagagacccctgaaaaagtaggacatttctgcaatttttcgaaaaagtgagatatttttg 4349932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 3334690 - 3334746
Alignment:
Q  19 agacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  3334690 agacccatgaaaaagtagggcatttctgcaatttttcgaaaaagtggggtatttttg 3334746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 55515551 - 55515611
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttc-gaaaaagtgaggtatttttg 75  Q
    ||||||||||||||||||||| |||||| |||||||||||  |||||||| ||||||||||    
T  55515551 cagagacccctgaaaaagtagggcatttttgcaatttttcaaaaaaagtggggtatttttg 55515611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 3087944 - 3087991
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagt 63  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||||    
T  3087944 cagagacccctgaaaaagtatggcatttctgcaatttttcgaaaaagt 3087991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 3086495 - 3086437
Alignment:
Q  17 agagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||| |  ||||||||||    
T  3086495 agagacccctgaaaaaatagggcatttctgcaatttttcgaaaaaatagggtatttttg 3086437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 653
Target Start/End: Complemental strand, 9816500 - 9816458
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgccatca 653  Q
    |||||||||||||||||||||||||||| |||| |||||||||    
T  9816500 cagtggcggagccagacaaaaaagtttggggtgaccgccatca 9816458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 10224481 - 10224431
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||||||||||| ||||||| ||||||||||||||||||| || |||||||    
T  10224481 ctgaaaaagtagggcatttacgcaatttttcgaaaaagtggggcatttttg 10224431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 23356680 - 23356630
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||||||||||| |||||| |||||||||||||||||||| || |||||||    
T  23356680 ctgaaaaagtagggcatttttgcaatttttcgaaaaagtggggcatttttg 23356630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 653
Target Start/End: Complemental strand, 33753049 - 33753007
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgccatca 653  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  33753049 cagtggcagagccagacaaaaaagtttggggtggccgccatca 33753007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 55514804 - 55514755
Alignment:
Q  26 tgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    ||||||||||| ||||||  ||||||||||||||||||| ||||||||||    
T  55514804 tgaaaaagtagggcatttcagcaatttttcgaaaaagtggggtatttttg 55514755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 33953071 - 33953107
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaa 61  Q
    |||||||||||| ||||||||||||||||||||||||    
T  33953071 ctgaaaaagtagggcatttatgcaatttttcgaaaaa 33953107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 653
Target Start/End: Complemental strand, 16401308 - 16401265
Alignment:
Q  610 tcagtggcggagccagacaaaaaagtttgaggtggccgccatca 653  Q
    |||||| |||||||||||||||||||||||||| ||| ||||||    
T  16401308 tcagtgacggagccagacaaaaaagtttgaggtagcctccatca 16401265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 19137819 - 19137869
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||||||||||| ||||||  ||||||||||||||||||| || |||||||    
T  19137819 ctgaaaaagtagggcatttgcgcaatttttcgaaaaagtggggcatttttg 19137869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 645
Target Start/End: Original strand, 23217291 - 23217325
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggc 645  Q
    |||||||||||||||||||||||||||| ||||||    
T  23217291 cagtggcggagccagacaaaaaagtttggggtggc 23217325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 23357942 - 23357992
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||||||||||| |||||| ||||||||||||||||| || || |||||||    
T  23357942 ctgaaaaagtagggcatttttgcaatttttcgaaaaaatggggcatttttg 23357992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 580
Target Start/End: Complemental strand, 24935351 - 24935321
Alignment:
Q  550 atattatagtaaattttatattattttgtct 580  Q
    |||||||||||||||||||||||||||||||    
T  24935351 atattatagtaaattttatattattttgtct 24935321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 652
Target Start/End: Complemental strand, 29947716 - 29947674
Alignment:
Q  611 cagtggcggagccagacaa-aaaagtttgaggtggccgccatc 652  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  29947716 cagtggcggagccagacaaaaaaagtttggggtggccgccatc 29947674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 25728772 - 25728727
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttcgaaaaa 61  Q
    |||||||||||||||||||||   |||| |||||||||||||||||    
T  25728772 cagagacccctgaaaaagtaggatatttctgcaatttttcgaaaaa 25728727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 652
Target Start/End: Complemental strand, 38115969 - 38115928
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgccatc 652  Q
    ||||||||||||| |||||||||||||| |||||||| ||||    
T  38115969 cagtggcggagcccgacaaaaaagtttggggtggccggcatc 38115928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 611 - 647
Target Start/End: Original strand, 3186696 - 3186732
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccg 647  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  3186696 cagtggcggagccagacaaaaatgtttggggtggccg 3186732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 10231220 - 10231268
Alignment:
Q  26 tgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtattttt 74  Q
    ||||||||||| ||||||  ||||||||||||||||||| || ||||||    
T  10231220 tgaaaaagtagggcatttgcgcaatttttcgaaaaagtggggcattttt 10231268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 611 - 647
Target Start/End: Complemental strand, 20038760 - 20038724
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccg 647  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  20038760 cagtggcggagccagacaaaaaaatttggggtggccg 20038724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 14146956 - 14147015
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||||||    
T  14146956 cagagacccctgaaaaagtagggcatttctgccatttttcgaaaaagtggggtatttttg 14147015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 14145650 - 14145593
Alignment:
Q  18 gagacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||||||||||||||||||  ||||| |||||||||||||||||||| ||||||||||    
T  14145650 gagacccctgaaaaagtaggccatttctgcaatttttcgaaaaagtggggtatttttg 14145593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 34880445 - 34880481
Alignment:
Q  27 gaaaaagtagagcatttatgcaatttttcgaaaaagt 63  Q
    |||||||||| ||||||||||||||||||||||||||    
T  34880445 gaaaaagtagggcatttatgcaatttttcgaaaaagt 34880481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 645
Target Start/End: Original strand, 3934364 - 3934399
Alignment:
Q  610 tcagtggcggagccagacaaaaaagtttgaggtggc 645  Q
    ||||||||||||||||||||||||||||| ||||||    
T  3934364 tcagtggcggagccagacaaaaaagtttggggtggc 3934399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 653
Target Start/End: Complemental strand, 41318360 - 41318321
Alignment:
Q  614 tggcggagccagacaaaaaagtttgaggtggccgccatca 653  Q
    |||||||| |||||||||||||||| ||||||||||||||    
T  41318360 tggcggagtcagacaaaaaagtttggggtggccgccatca 41318321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 36626469 - 36626423
Alignment:
Q  29 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||||||| ||||||||||||||||| | |||||||||| |||||||    
T  36626469 aaaagtagggcatttatgcaattttttgcaaaagtgaggcatttttg 36626423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 645
Target Start/End: Original strand, 38974743 - 38974777
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggc 645  Q
    |||||||||||||||||||||||||||| ||||||    
T  38974743 cagtggcggagccagacaaaaaagtttggggtggc 38974777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 33373168 - 33373213
Alignment:
Q  30 aaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    ||||||| ||||||| ||||||||||||||||||| || |||||||    
T  33373168 aaagtagggcatttacgcaatttttcgaaaaagtggggcatttttg 33373213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 34506420 - 34506375
Alignment:
Q  30 aaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    ||||||| ||||||  |||||||||||||||||| |||||||||||    
T  34506420 aaagtagggcatttgggcaatttttcgaaaaagtaaggtatttttg 34506375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 43962821 - 43962768
Alignment:
Q  19 agacccctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtattt 72  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||    
T  43962821 agacccctgaaaaagtaaagcatttctgcaatttttcgaaaaagtggggtattt 43962768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 609 - 652
Target Start/End: Complemental strand, 8363994 - 8363951
Alignment:
Q  609 atcagtggcggagccagacaaaaaagtttgaggtggccgccatc 652  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  8363994 atcagtggcggagccagacaaaaaagtttggggtggccgccatc 8363951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 18655180 - 18655135
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttcgaaaaa 61  Q
    |||||||  |||||||||||||||||||||||||||||||||||||    
T  18655180 cagagacttctgaaaaagtagagcatttatgcaatttttcgaaaaa 18655135  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 611 - 652
Target Start/End: Original strand, 38871472 - 38871513
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgccatc 652  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  38871472 cagtggcggagccagacaaaaaagtttggagtggccgccatc 38871513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 611 - 651
Target Start/End: Complemental strand, 44660913 - 44660873
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgccat 651  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  44660913 cagtggcggagccagacaaaaatgtttggggtggccgccat 44660873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 46484368 - 46484321
Alignment:
Q  28 aaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    ||||||||| ||||||||||||||||| | |||| |||||||||||||    
T  46484368 aaaaagtagggcatttatgcaattttttgcaaaaatgaggtatttttg 46484321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 652
Target Start/End: Original strand, 21451990 - 21452031
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgccatc 652  Q
    ||||||||||||||| ||||||| |||| |||||||||||||    
T  21451990 cagtggcggagccagccaaaaaattttggggtggccgccatc 21452031  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 46419398 - 46419362
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaa 61  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  46419398 ctgaaaaagtagggcatttatgcaattttttgaaaaa 46419362  T

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Target: scaffold0586 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 7687 - 7638
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtattttt 74  Q
    |||||||||||| |||||||||||||||||||||||||||| | ||||||    
T  7687 ctgaaaaagtagggcatttatgcaatttttcgaaaaagtgaagcattttt 7638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 8684 - 8733
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtattttt 74  Q
    |||||||||||| |||||| ||||||||||||||||||||||| ||||||    
T  8684 ctgaaaaagtagggcatttgtgcaatttttcgaaaaagtgaggcattttt 8733  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 611 - 652
Target Start/End: Complemental strand, 6807436 - 6807395
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgccatc 652  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  6807436 cagtggcggagccagacaaaaaagtttggggtggccgccatc 6807395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 652
Target Start/End: Complemental strand, 7171778 - 7171737
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgccatc 652  Q
    |||||||||||||||||||||| ||||| |||||||| ||||    
T  7171778 cagtggcggagccagacaaaaatgtttggggtggccgtcatc 7171737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 652
Target Start/End: Complemental strand, 32398575 - 32398534
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgccatc 652  Q
    ||||||||||||||| ||||||| |||| |||||||||||||    
T  32398575 cagtggcggagccagccaaaaaattttggggtggccgccatc 32398534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 608 - 644
Target Start/End: Complemental strand, 9303648 - 9303612
Alignment:
Q  608 aatcagtggcggagccagacaaaaaagtttgaggtgg 644  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  9303648 aatcagtggtggagccagacaaaaaagtttggggtgg 9303612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 620 - 652
Target Start/End: Original strand, 10894901 - 10894933
Alignment:
Q  620 agccagacaaaaaagtttgaggtggccgccatc 652  Q
    ||||||||||||||||||| |||||||||||||    
T  10894901 agccagacaaaaaagtttggggtggccgccatc 10894933  T

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Target: scaffold1234 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1234
Description:

Target: scaffold1234; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 1851 - 1801
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    |||||||||||| |||||| |||||||||||||||||||| || |||||||    
T  1851 ctgaaaaagtagggcatttttgcaatttttcgaaaaagtggggcatttttg 1801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 24742825 - 24742776
Alignment:
Q  26 tgaaaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    ||||||||||| |||||| || ||||||||||||||||| ||||||||||    
T  24742825 tgaaaaagtagggcatttgtgtaatttttcgaaaaagtggggtatttttg 24742776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 645
Target Start/End: Original strand, 2337886 - 2337921
Alignment:
Q  610 tcagtggcggagccagacaaaaaagtttgaggtggc 645  Q
    ||||||||||||||||||||||||||||| ||||||    
T  2337886 tcagtggcggagccagacaaaaaagtttggggtggc 2337921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 23211371 - 23211332
Alignment:
Q  25 ctgaaaaagtagagcatttatgcaatttttcgaaaaagtg 64  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  23211371 ctgaaaaagtagggcatttttgcaatttttcgaaaaagtg 23211332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 652
Target Start/End: Complemental strand, 2736837 - 2736795
Alignment:
Q  610 tcagtggcggagccagacaaaaaagtttgaggtggccgccatc 652  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||    
T  2736837 tcagtggcggagccagacaaaaatgtttggggtggccgtcatc 2736795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 652
Target Start/End: Complemental strand, 40925884 - 40925842
Alignment:
Q  610 tcagtggcggagccagacaaaaaagtttgaggtggccgccatc 652  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||    
T  40925884 tcagtggcggagccagacaaaaatgtttggggtggccgtcatc 40925842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 13102447 - 13102402
Alignment:
Q  30 aaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 75  Q
    ||||||| |||||| |||||||||| |||||||||||| |||||||    
T  13102447 aaagtagggcatttgtgcaattttttgaaaaagtgaggcatttttg 13102402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 33854451 - 33854406
Alignment:
Q  16 cagagacccctgaaaaagtagagcatttatgcaatttttcgaaaaa 61  Q
    |||||||  |||||||||||| | ||||||||||||||||||||||    
T  33854451 cagagacttctgaaaaagtagggtatttatgcaatttttcgaaaaa 33854406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 609 - 653
Target Start/End: Original strand, 14195158 - 14195202
Alignment:
Q  609 atcagtggcggagccagacaaaaaagtttgaggtggccgccatca 653  Q
    ||||||||||||| |||||||||||||||| |||| | |||||||    
T  14195158 atcagtggcggagtcagacaaaaaagtttggggtgactgccatca 14195202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 611 - 647
Target Start/End: Original strand, 22126360 - 22126396
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccg 647  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  22126360 cagtggcggagccagacaaaaatgtttggggtggccg 22126396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 39195645 - 39195609
Alignment:
Q  27 gaaaaagtagagcatttatgcaatttttcgaaaaagt 63  Q
    |||||||||| | ||||||||||||||||||||||||    
T  39195645 gaaaaagtagggtatttatgcaatttttcgaaaaagt 39195609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 39197830 - 39197866
Alignment:
Q  27 gaaaaagtagagcatttatgcaatttttcgaaaaagt 63  Q
    |||||||||| | ||||||||||||||||||||||||    
T  39197830 gaaaaagtagggtatttatgcaatttttcgaaaaagt 39197866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 51970057 - 51970093
Alignment:
Q  27 gaaaaagtagagcatttatgcaatttttcgaaaaagt 63  Q
    |||||||||| | ||||||||||||||||||||||||    
T  51970057 gaaaaagtagggtatttatgcaatttttcgaaaaagt 51970093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 645
Target Start/End: Original strand, 10626 - 10660
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggc 645  Q
    |||||||||||||||||||||||||||| ||||||    
T  10626 cagtggcggagccagacaaaaaagtttggggtggc 10660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 648
Target Start/End: Original strand, 11736 - 11773
Alignment:
Q  611 cagtggcggagccagacaaaaaagtttgaggtggccgc 648  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  11736 cagtggcggagccagacaaaaaggtttggggtggccgc 11773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 191235 - 191199
Alignment:
Q  27 gaaaaagtagagcatttatgcaatttttcgaaaaagt 63  Q
    |||||||||| |||||||||||||||||| |||||||    
T  191235 gaaaaagtagggcatttatgcaatttttcaaaaaagt 191199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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