View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_60 (Length: 377)
Name: NF20262_high_60
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_60 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 16285472 - 16285825
Alignment:
| Q |
8 |
ataatacttgaaggataactactcattttgaatttgttttagataactactcattagtttttaaatagattacaaaaaattaatataaaatagatatata |
107 |
Q |
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| T |
16285472 |
ataatatttgaaggataactactcattttgaatttgttttagataactactcattagtttttaaatatattacaaaatattaatataaaatagatatata |
16285571 |
T |
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| Q |
108 |
accatatctcaacaaagaacgtgaaaattacagcattactggtaacaaagaatgtaaactgaatttgccagctcaaatatccataataacttgtatgtca |
207 |
Q |
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| T |
16285572 |
accatatctcaacaaagaacgtgaaaattacagcattactggtaacaaacaatgtaaactgaatttgccagctcaaatatccataataacttgtatgtca |
16285671 |
T |
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| Q |
208 |
ttctggcaaagaatcattatcattattatttaaatgaaagatgaagaaaatgaattagcataagaaaatattgacatagaaatggctacatgttataatg |
307 |
Q |
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| T |
16285672 |
ttcaggcaaagaatcattatcattattatttaaatgaaagatgaagaaaatgaattagcataagaaaatattgacatagaaatggctacatgttataatg |
16285771 |
T |
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| Q |
308 |
taactcttagtgcttcaaacaatatctggatgactgatgatgttatgataaaac |
361 |
Q |
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| T |
16285772 |
taactctcagtgcttcaaacaatatctggatgactgatgatgttatgataaaac |
16285825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 49 - 361
Target Start/End: Complemental strand, 17264261 - 17263949
Alignment:
| Q |
49 |
gataactactcattagtttttaaatagattacaaaaaattaatataaaatagatatataaccatatctcaacaaagaacgtgaaaattacagcattactg |
148 |
Q |
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| T |
17264261 |
gataactactcattagtttttaaatatattacaaaaaattaatataaaacagatatataaccatatctcaacaaagaacgtgaaaattacagcattactg |
17264162 |
T |
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| Q |
149 |
gtaacaaagaatgtaaactgaatttgccagctcaaatatccataataacttgtatgtcattctggcaaagaatcattatcattattatttaaatgaaaga |
248 |
Q |
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| T |
17264161 |
gtaacaaacaatgtaaactgaatttgccagctcaaatatccataataacttgtatgtcattcaggcaaagaatcattatcattattatttaaatgaaaga |
17264062 |
T |
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| Q |
249 |
tgaagaaaatgaattagcataagaaaatattgacatagaaatggctacatgttataatgtaactcttagtgcttcaaacaatatctggatgactgatgat |
348 |
Q |
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| T |
17264061 |
tgaagaaaatgaattagcataagaaaatattgacatagaaatggctacatgttataatgtaactcttagtgcttcaaacaatatctggatgactgatgat |
17263962 |
T |
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| Q |
349 |
gttatgataaaac |
361 |
Q |
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| T |
17263961 |
gttatgataaaac |
17263949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 17264339 - 17264296
Alignment:
| Q |
30 |
tcattttgaatttgttttagataactactcattagtttttaaat |
73 |
Q |
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| T |
17264339 |
tcattttgaatttgttttagataactgctcattagttgttaaat |
17264296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 16285411 - 16285450
Alignment:
| Q |
34 |
tttgaatttgttttagataactactcattagtttttaaat |
73 |
Q |
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| T |
16285411 |
tttgaatttgttttagataactgctcattagttgttaaat |
16285450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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