View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_high_67 (Length: 364)

Name: NF20262_high_67
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_high_67
NF20262_high_67
[»] scaffold1353 (2 HSPs)
scaffold1353 (26-346)||(664-984)
scaffold1353 (10-276)||(925-1192)
[»] scaffold1352 (2 HSPs)
scaffold1352 (26-346)||(1006-1326)
scaffold1352 (10-276)||(798-1065)
[»] chr1 (8 HSPs)
chr1 (1-345)||(10026665-10027012)
chr1 (33-280)||(8730482-8730730)
chr1 (1-180)||(20523688-20523867)
chr1 (1-283)||(8710352-8710635)
chr1 (1-276)||(10026449-10026723)
chr1 (294-346)||(8710569-8710621)
chr1 (287-345)||(8730668-8730726)
chr1 (10-76)||(20523624-20523690)
[»] chr7 (4 HSPs)
chr7 (9-283)||(3579637-3579910)
chr7 (17-283)||(3579205-3579472)
chr7 (287-346)||(3579644-3579703)
chr7 (297-345)||(3579407-3579455)
[»] scaffold0881 (1 HSPs)
scaffold0881 (60-220)||(3565-3723)


Alignment Details
Target: scaffold1353 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: scaffold1353
Description:

Target: scaffold1353; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 346
Target Start/End: Original strand, 664 - 984
Alignment:
26 atcaataatgatgatgatgaagttagcgttgttgataaaggaaaatggaatacgattcaaacaaatgaggagttagaacttcatcatctttggatgaaga 125  Q
    ||||||||| |||||||||||| ||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||| |||||||| |||||    
664 atcaataataatgatgatgaagctagcgttgttgataatgaaaaaaggaatatgattcaaacaaatgaggagttagaacttcatcctctttggaagaaga 763  T
126 aatcctagaatttgcatcacatttcctactctttccacatgatgcactataaattgggttaggtgcctcaaagttttttgaagatggaactgattctacg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
764 aatcctagaatttgcatcacatttcctactctttccacatgatgcactacaaattgggttaggtgcctcaaagttttttgaagatggaactgattctaag 863  T
226 gtcgaactcaaaattcgtgaagttgttgaagaaaatttattagatgaattttacttccaataaattaatccaataaattttcttcaatgccttcaccaat 325  Q
    || ||||| |||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||| ||||    
864 gtggaactaaaaattggtgaagctgatgaagaaaatttattagatgaattttacttccaataaattaatccaataaattttctttgataccttcaacaat 963  T
326 attgagttcgagcctagaatc 346  Q
    |||||||||||||| ||||||    
964 attgagttcgagccgagaatc 984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1353; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 1192 - 925
Alignment:
10 tatcaataatgtttcaatcaataatgatgatgatgaagttagcgttgttgataaaggaaaatggaatacgattcaaacaaatgaggagttagaa-cttca 108  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| | |||| |||||| |||||||||||||||| |||||||| |||||    
1192 tatcaataaagtttcaatcaataataatgatgatgaagctagcgttgttgataaggaaaaagggaatatgattcaaacaaatgagcagttagaatcttca 1093  T
109 tcatctttggatgaagaaatcctagaatttgcatcacatttcctactctttccacatgatgcactataaattgggttaggtgcctcaaagttttttgaag 208  Q
    |  |||||| | |  ||| |||||| ||||| |||||||||||||| |||| || ||||||||||| || |||||  ||||||| |||||||||||||||    
1092 ttctctttgaaaggggaagtcctagcatttgaatcacatttcctaccctttgcatatgatgcactacaatttggggaaggtgccacaaagttttttgaag 993  T
209 atggaactgattctacggtcgaactcaaaattcgtgaagttgttgaagaaaatttattagatgaattt 276  Q
    ||||||||||||||  | |||||||||| |||  ||||| | |  ||||||||||||| ||| |||||    
992 atggaactgattctcggctcgaactcaatattgttgaaggtatcaaagaaaatttattggattaattt 925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1352 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: scaffold1352
Description:

Target: scaffold1352; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 346
Target Start/End: Complemental strand, 1326 - 1006
Alignment:
26 atcaataatgatgatgatgaagttagcgttgttgataaaggaaaatggaatacgattcaaacaaatgaggagttagaacttcatcatctttggatgaaga 125  Q
    ||||||||| |||||||||||| ||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||| |||||||| |||||    
1326 atcaataataatgatgatgaagctagcgttgttgataatgaaaaaaggaatatgattcaaacaaatgaggagttagaacttcatcctctttggaagaaga 1227  T
126 aatcctagaatttgcatcacatttcctactctttccacatgatgcactataaattgggttaggtgcctcaaagttttttgaagatggaactgattctacg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
1226 aatcctagaatttgcatcacatttcctactctttccacatgatgcactacaaattgggttaggtgcctcaaagttttttgaagatggaactgattctaag 1127  T
226 gtcgaactcaaaattcgtgaagttgttgaagaaaatttattagatgaattttacttccaataaattaatccaataaattttcttcaatgccttcaccaat 325  Q
    || ||||| |||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||| ||||    
1126 gtggaactaaaaattggtgaagctgatgaagaaaatttattagatgaattttacttccaataaattaatccaataaattttctttgataccttcaacaat 1027  T
326 attgagttcgagcctagaatc 346  Q
    |||||||||||||| ||||||    
1026 attgagttcgagccgagaatc 1006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1352; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 798 - 1065
Alignment:
10 tatcaataatgtttcaatcaataatgatgatgatgaagttagcgttgttgataaaggaaaatggaatacgattcaaacaaatgaggagttagaa-cttca 108  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| | |||| |||||| |||||||||||||||| |||||||| |||||    
798 tatcaataaagtttcaatcaataataatgatgatgaagctagcgttgttgataaggaaaaagggaatatgattcaaacaaatgagcagttagaatcttca 897  T
109 tcatctttggatgaagaaatcctagaatttgcatcacatttcctactctttccacatgatgcactataaattgggttaggtgcctcaaagttttttgaag 208  Q
    |  |||||| | |  ||| |||||| ||||| |||||||||||||| |||| || ||||||||||| || |||||  ||||||| |||||||||||||||    
898 ttctctttgaaaggggaagtcctagcatttgaatcacatttcctaccctttgcatatgatgcactacaatttggggaaggtgccacaaagttttttgaag 997  T
209 atggaactgattctacggtcgaactcaaaattcgtgaagttgttgaagaaaatttattagatgaattt 276  Q
    ||||||||||||||  | |||||||||| |||  ||||| | |  ||||||||||||| ||| |||||    
998 atggaactgattctcggctcgaactcaatattgttgaaggtatcaaagaaaatttattggattaattt 1065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 10027012 - 10026665
Alignment:
1 aatggagagtatcaataatgtttcaatcaataatgatgatgatgaagttagcgttgttgataaaggaaaatggaatacgattcaaacaaatgaggagtta 100  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| |||||| ||||||| |||||||||| ||     
10027012 aatggagggtatcaataatgtttcaatcaataataatgatgatgaagctagcattgttgataaaggaaaagggaatatgattcaatcaaatgaggaattg 10026913  T
101 gaa-cttcatcatctttggatgaagaaatcctagaatttgcatcacatttcctactctttccacatgatgcactataaattgggttaggtgcctcaaagt 199  Q
    ||| ||||||| |||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| || |||||  ||||||||||||||    
10026912 gaatcttcatcctctttggaagaagaagtcctagaatctgcatcacatttcatactctttccacatgatgcactacaatttggggaaggtgcctcaaagt 10026813  T
200 tttttgaagatggaactgattctacggtcgaactcaaaattcgtgaagttgt--tgaagaaaatttattagatgaattttacttccaataaattaatcca 297  Q
    ||||||||||||||||||||||||   |||||||||| ||| |||||| | |  | || ||| ||||||||||||||||||||||||||||||| ||  |    
10026812 tttttgaagatggaactgattctagactcgaactcaatattggtgaaggtatcctaaataaattttattagatgaattttacttccaataaattcattaa 10026713  T
298 ataaattttcttcaatgccttcaccaatattgagttcgagcctagaat 345  Q
    ||||||||||||| || |||||| ||||||||||||||  ||||||||    
10026712 ataaattttcttcgataccttcatcaatattgagttcggccctagaat 10026665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 33 - 280
Target Start/End: Original strand, 8730482 - 8730730
Alignment:
33 atgatgatgatgaagttagcgttgttgataaaggaaaatggaatacgattcaaacaaatgaggagttagaa-cttcatcatctttggatgaagaaatcct 131  Q
    ||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||    
8730482 atgatgatgatgaagctagcgttgctgataaaggaaaagggaatatgattcaaacaaatgaggagttagaaacttcatcctctttggaagaagaaatcct 8730581  T
132 agaatttgcatcacatttcctactctttccacatgatgcactataaattgggttaggtgcctcaaagttttttgaagatggaactgattctacggtcgaa 231  Q
    |||| |||||||||||||||||||||||||||||||||||||| || |||||  ||||||||||||||||| ||||||||||||| |||||| | |||||    
8730582 agaagttgcatcacatttcctactctttccacatgatgcactacaatttggggaaggtgcctcaaagttttatgaagatggaactaattctaggctcgaa 8730681  T
232 ctcaaaattcgtgaagttgttgaagaaaatttattagatgaattttact 280  Q
    ||||| ||| |||||| | | || ||||||||||| |||||||||||||    
8730682 ctcaatattggtgaaggtatcgatgaaaatttattggatgaattttact 8730730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 20523867 - 20523688
Alignment:
1 aatggagagtatcaataatgtttcaatcaataatgatgatgatgaagttagcgttgttgataaaggaaaatggaatacgattcaaacaaatgaggagtta 100  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||    
20523867 aatggagggtatcaataatgtttcaatcaataataatgatgatgaagctagcgttgttgataatggaaaatggaatacgattcaaacaaatgagaagtta 20523768  T
101 gaacttcatcatctttggatgaagaaatcctagaatttgcatcacatttcctactctttccacatgatgcactataaatt 180  Q
    |||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
20523767 gaacttcatcctctttggaagaagaaatcttagaatttgcatcacatttcctactctttccacatgatgcactacaaatt 20523688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 8710352 - 8710635
Alignment:
1 aatggagagtatcaataatgtttcaatcaataatgatgatgatgaagttagcgttgttgataaaggaaaatggaatacgattcaaacaaatgaggagtta 100  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||| |||||| |||| |||||| ||||||||||||||||||||||    
8710352 aatggagggtatcaatgatgtttcaatcaataataatgatgatgaagctagcgttgtttataaagaaaaagggaatatgattcaaacaaatgaggagtta 8710451  T
101 gaa-cttcatcatctttggatgaagaaatcctagaatttgcatcacatttcctactctttccacatgatgcactataaattgggttaggtgcctcaaagt 199  Q
    |||  |||||| |||  ||| |||||| |||||| |||||||||||||||||||| ||||||| ||||| ||||| || |||||  ||||||||||||||    
8710452 gaattttcatcctctggggaagaagaagtcctagcatttgcatcacatttcctaccctttccatatgattcactacaatttgggaaaggtgcctcaaagt 8710551  T
200 tttttgaagatggaactgattctacggtcgaactcaaaattcgtgaagttgttgaagaaaatttattagatgaattttacttcc 283  Q
    | |||  || |||||||||||||| | |||||||||| |||  |||||   |||||||||||||||| || | |||||||||||    
8710552 tatttacaggtggaactgattctaggctcgaactcaatattgatgaaggcattgaagaaaatttattggacggattttacttcc 8710635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 10026449 - 10026723
Alignment:
1 aatggagagtatcaataatgtttcaatcaataatgatgatgatgaagttagcgttgttgataaaggaaaatggaatacgattcaaacaaatgaggagtta 100  Q
    ||||||| ||||||||| |||||||||||||||| ||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||    
10026449 aatggagggtatcaatagtgtttcaatcaataataatgataatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgagtagtta 10026548  T
101 gaa-cttcatcatctttggatgaagaaatcctagaatttgcatcacatttcctactctttccacatgatgcactataaattgggttaggtgcctcaaagt 199  Q
    ||| ||||||| ||| || | ||| || |||||| |||||||||||||||||| |  |||||| || |||||||| || ||||   ||||||||||||||    
10026549 gaatcttcatcctctatgaaagaaaaagtcctagcatttgcatcacatttcctgccatttccatatcatgcactacaatttgg--aaggtgcctcaaagt 10026646  T
200 tttttgaagatggaactgattctacggtcgaactcaaaattcgtgaagttgttgaagaaaatttattagatgaattt 276  Q
    ||||||||||||||| | |||||| || ||||||||| |||  ||||| | | ||||||||||||||  ||||||||    
10026647 tttttgaagatggaattaattctagggccgaactcaatattgatgaaggtatcgaagaaaatttatttaatgaattt 10026723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 8710621 - 8710569
Alignment:
294 tccaataaattttcttcaatgccttcaccaatattgagttcgagcctagaatc 346  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
8710621 tccaataaattttcttcaatgccttcatcaatattgagttcgagcctagaatc 8710569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 8730726 - 8730668
Alignment:
287 aaattaatccaataaattttcttcaatgccttcaccaatattgagttcgagcctagaat 345  Q
    ||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||    
8730726 aaattcatccaataaattttcatcgataccttcaccaatattgagttcgagcctagaat 8730668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 20523624 - 20523690
Alignment:
10 tatcaataatgtttcaatcaataatgatgatgatgaagttagcgttgttgataaaggaaaatggaat 76  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| | |||| |||||    
20523624 tatcaataaagtttcaatcaataataatgatgatgaagctagcgttgttgataaggaaaaagggaat 20523690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 3579910 - 3579637
Alignment:
9 gtatcaataatgtttcaatcaataatgatgatgatgaagttagcgttgttgataaaggaaaatggaatacgattcaaacaaatgaggagttagaa-cttc 107  Q
    ||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| ||||    
3579910 gtatcaataatgtttaaatcaataataatgatgatgaagctagcgttgttgataaagaaaaagggaatatgattcaaacaaatgaggagttagaatcttc 3579811  T
108 atcatctttggatgaagaaatcctagaatttgcatcacatttcctactctttccacatgatgcactataaattgggttaggtgcctcaaagttttttgaa 207  Q
    ||| | |||||| || ||| || |||| ||||||||||||||||||| |||| || |||||||||||||| |||||  |||||||||  || ||||||||    
3579810 atcctatttggaagatgaagtcatagattttgcatcacatttcctacccttttcatatgatgcactataatttgggaaaggtgcctc--agatttttgaa 3579713  T
208 gatggaactgattctacggtcgaactcaaaattcgtgaagttgttgaagaaaatttattagatgaattttacttcc 283  Q
    |||||||||||||||| | |||||||||| ||| |||||| | | |||||||||||||| ||| ||||||||||||    
3579712 gatggaactgattctaggctcgaactcaatattggtgaaggtatggaagaaaatttattggatcaattttacttcc 3579637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 3579205 - 3579472
Alignment:
17 aatgtttcaatcaataatgatgatgatgaagttagcgttgttgataaaggaaaatggaatacgattcaaacaaatgaggagttagaa-cttcatcatctt 115  Q
    ||||||||||||||||||  |||||| |||| |||||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||| | ||    
3579205 aatgtttcaatcaataatagtgatgacgaagctagcgttgttgataaaggaaaaggaaatatgattcaaacaaatgaggagttagaatcttcatcctatt 3579304  T
116 tggatgaagaaatcctagaatttgcatcacatttcctactctttccacatgatgcactataaattgggttaggtgcctcaaagttttttgaagatggaac 215  Q
    |||| ||| || || |||||||| ||| ||| |||||||||||||||||||||| |||| || |||||  ||||||||||||||||||||||||| ||||    
3579305 tggaagaaaaagtcttagaattttcattacagttcctactctttccacatgatgtactacaatttggggaaggtgcctcaaagttttttgaagatagaac 3579404  T
216 tgattctacggtcgaactcaaaattcgtgaagttgttgaagaaaatttattagatgaattttacttcc 283  Q
    | |||||| | |||||||||| ||| |||||| | | ||||||||||||||||||| |||||||||||    
3579405 tcattctaggctcgaactcaatattggtgaaggtatcgaagaaaatttattagatggattttacttcc 3579472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 3579644 - 3579703
Alignment:
287 aaattaatccaataaattttcttcaatgccttcaccaatattgagttcgagcctagaatc 346  Q
    ||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||    
3579644 aaattgatccaataaattttcttccataccttcaccaatattgagttcgagcctagaatc 3579703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 3579455 - 3579407
Alignment:
297 aataaattttcttcaatgccttcaccaatattgagttcgagcctagaat 345  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||    
3579455 aataaattttcttcgataccttcaccaatattgagttcgagcctagaat 3579407  T

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Target: scaffold0881 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0881
Description:

Target: scaffold0881; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 3723 - 3565
Alignment:
60 ataaaggaaaatggaatacgattcaaacaaatgaggagttagaa-cttcatcatctttggatgaagaaatcctagaatttgcatcacatttcctactctt 158  Q
    ||||||||||| |||||  |||||||||||||||    |||||  ||||||| |||| ||| ||||||  ||||| ||||||||||||||    ||||||    
3723 ataaaggaaaagggaatttgattcaaacaaatgaa---ttagattcttcatcctcttcggaagaagaagacctagcatttgcatcacattctaaactctt 3627  T
159 tccacatgatgcactataaattgggttaggtgcctcaaagttttttgaagatggaactgatt 220  Q
    |||| ||||| |||||  | |||||  ||||||||||||||||||| |||||||||| ||||    
3626 tccatatgatacactacgatttggggaaggtgcctcaaagttttttcaagatggaaccgatt 3565  T

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