View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_68 (Length: 364)
Name: NF20262_high_68
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_68 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 54468494 - 54468156
Alignment:
| Q |
13 |
gaagcccttgaatttcttttcgcatgtcttcatctttcatgactagttttcgatattgtcccaaatcttttcttgtttctacaattgctacaaactttat |
112 |
Q |
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| T |
54468494 |
gaagcccttgaatttcttttcgcatgtcttcatctttcatgactagttttcgatattgtcccaaatcttttcttgtttctacaattgctacaaactttat |
54468395 |
T |
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| Q |
113 |
cgcaaaataagaaattaataagacatgtgaaaaaataatgatctatatgtgcagttgtatagctctcttttttaatatagaatcgtttaaaagagaaatt |
212 |
Q |
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| T |
54468394 |
cgcaaaataagaaattaataagatatatgaaaaaataatggtctatatgtgcagttgtatagctctcttttttaatatagaatcgtttaaaagagaaatt |
54468295 |
T |
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| Q |
213 |
tattccctaaccgaaaaggataaaacactcataattatt--ttatattc-nnnnnnnaaggatagggagatcatattgaacatcgtaagaagtgttggag |
309 |
Q |
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| T |
54468294 |
tattccctaaccgaaaaggaaaaaacactcataattatttattatattcttttttttaaggatagggagatcatattgaacatcgtaagcagtgttggag |
54468195 |
T |
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| Q |
310 |
ttgagataaaatgtggaagccttttctaagcagcaaagc |
348 |
Q |
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| T |
54468194 |
ttgagataaaatgtggaagccttttctaagcagcaaagc |
54468156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 11227677 - 11227583
Alignment:
| Q |
18 |
ccttgaatttcttttcgcatgtcttcatctttcatgactagttttcgatattgtcccaaatcttttcttgtttctacaattgctacaaactttat |
112 |
Q |
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| T |
11227677 |
ccttgaatttcttccggcatatcttggtctttcatgactagtttccaatgttctcgcagatcatttcttgattctacaattgctacaaactttat |
11227583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 54458978 - 54458884
Alignment:
| Q |
18 |
ccttgaatttcttttcgcatgtcttcatctttcatgactagttttcgatattgtcccaaatcttttcttgtttctacaattgctacaaactttat |
112 |
Q |
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| T |
54458978 |
ccttgaatttcttctggcatgttttgatctttcatgaataatttccaatattctcccagattatttcttgattctacgatttctacaaactttat |
54458884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 11240352 - 11240256
Alignment:
| Q |
21 |
tgaatttcttttcgcatgtcttcatctttcatgactagttttcgatattgtcccaaatcttttcttgtttctacaattgctacaaactttatcgcaa |
117 |
Q |
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| T |
11240352 |
tgaatttcttcaggcatgtcttggtttttcatgactagtttccaatattctcgcagatcatttcttgattccacaatagctacaaactttattgcaa |
11240256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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