View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20262_high_70 (Length: 363)
Name: NF20262_high_70
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_70 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 29678987 - 29678650
Alignment:
| Q |
11 |
caaaggaccaacagcatagataggagggattttctcatcatggtcatataatgcatcaatagaatattgttccaaacctgagaaggcattaacaataatt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |
|
|
| T |
29678987 |
caaaggaccaacagcatagataggagggattttttcatcatgatcatataatgcatcaatagaatattgttccaaatctgaaaaggtattaacaataatt |
29678888 |
T |
|
| Q |
111 |
cctttggtgtcgttggttcgctgagcaaggttgtaataggcctcataaccaccgtctttgctataagcagcattaggtaaaacactagaaggtactaaat |
210 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29678887 |
cctttggtgtcgttgattctccgagcaaggttgtaataggcttcataaccaccatctttgctataagcagcattaggtaaaacactagaaggtactaaat |
29678788 |
T |
|
| Q |
211 |
ttgtgaaaccaggaatcaacaactcaggatcagaatcattgaacacgtcgtctactcgacggttttgaagggaaagcatgaatcctaaaaatccaacatt |
310 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29678787 |
ttgtaaaaccaggaatcaacaactcaggatcataatcattgaacacgtcgtctactcgacggttttgaagggaaagcatgaatcctaaaaatccaacatt |
29678688 |
T |
|
| Q |
311 |
tgatgttaggaacaaataagaagggataccaagttcat |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29678687 |
tgatgttaggaacaaataagaagggataccaagttcat |
29678650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 29701447 - 29701101
Alignment:
| Q |
11 |
caaaggaccaacagcatagataggagggattttctcatcatggtcatataatgcatcaatagaatattgttccaaacctgagaaggcattaacaataatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||| |
|
|
| T |
29701447 |
caaaggaccaacagcatagataggagggattttctcatcatgatcatataatgcatcaatagaagattgttccaaatctgaaaaggtattaacaataatc |
29701348 |
T |
|
| Q |
111 |
cctttggtgtcgttggttcgctgagcaaggttgtaataggcctcataaccaccgtctttgctataagcagcattaggtaaaacactagaaggtactaaat |
210 |
Q |
| |
|
||||||||||| | | || ||| || || ||||| || ||| ||||| ||||| || || ||||| |||||||||| ||||||| ||| | |
|
|
| T |
29701347 |
cctttggtgtctctaaacctctcagctagtttataataagcaatatatccaccatctttattaaaacaagcatcaggtaaaacattagaaggaacttggt |
29701248 |
T |
|
| Q |
211 |
ttgtgaaaccaggaa---tcaacaactcaggatca------gaatcattgaacacgtcgtctactcgacggttttgaagggaaagcatgaatcctaaaaa |
301 |
Q |
| |
|
||| || |||||||| ||||||||| | ||||| ||||||| ||| || || || | | | ||||||| |||||||||||||| | |||||| |
|
|
| T |
29701247 |
ttgagataccaggaatattcaacaactgatgatcacggtcggaatcatcgaaaacttcttcgatttggcggtttttaagggaaagcatgagacttaaaaa |
29701148 |
T |
|
| Q |
302 |
tccaacatttgatgttaggaacaaataagaagggataccaagttcat |
348 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
29701147 |
accaacatttgatgttagaaacaaataagaagggataccaaattcat |
29701101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University