View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_71 (Length: 358)
Name: NF20262_high_71
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_71 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 1389556 - 1389873
Alignment:
| Q |
10 |
aagaatatctaatatgtagtgtttttnnnnnnntaaaattaattctagaatatcaattatacactaatgggatgtttttagatgaaaaattttgtcaaaa |
109 |
Q |
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| T |
1389556 |
aagaaaatctaatatgtagtgtttttaaaaaaaaaatattaattctagaatatcaattatacactaatgggatgtttttagatgaaaaaatttgtcaaaa |
1389655 |
T |
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| Q |
110 |
tatcccagtcaattgtttcagagttaatagcagttttaccacatacaatacaacaagggtttaacatgttggaaaataaaggcatgagtcttgttgatgt |
209 |
Q |
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| T |
1389656 |
tatcccagtcaattgtttcagagttaatagcagttttaccacatgcaa-----caagggtttaacatgttggaa----------tgagtcttgttgatgt |
1389740 |
T |
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| Q |
210 |
caccactctaaggcattacataatgatttattttcaggttgaaaaattcgaatattataagcgtctgaaaatgtta--atattaagttgacaaggaatac |
307 |
Q |
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| T |
1389741 |
caccactctcaggcattacatattgatttattttcaggctgaaaaattcgaatattataagcgtctgaaaatgttaatatattaagttgacaaggaatac |
1389840 |
T |
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| Q |
308 |
caagcaataccgtgaagaaataatctccctaat |
340 |
Q |
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| T |
1389841 |
catgcaataccgtgaagaaataatctccctaat |
1389873 |
T |
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Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 161 - 336
Target Start/End: Original strand, 4747164 - 4747339
Alignment:
| Q |
161 |
aacaagggtttaacatgttggaaaataaaggcatgagtcttgttgatgtcaccactctaaggcattacataatgatttattttcaggttgaaaaattcga |
260 |
Q |
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| T |
4747164 |
aacatgggcttaacatgttggaaaataaaggca-gagtcttggtgatggcaccactctcagccattacatg--gattgactctgaggttcaaaaattcaa |
4747260 |
T |
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| Q |
261 |
atattataagcgtctgaaaatgttaatattaagttgacaaggaatacc---aagcaataccgtgaagaaataatctccc |
336 |
Q |
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| T |
4747261 |
atattataagcgtcagaaaatgtgaatattaagttgacgagaaataccttgaggcaggaccgtgaagaaataatctccc |
4747339 |
T |
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