View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_79 (Length: 344)
Name: NF20262_high_79
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_79 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 125 - 331
Target Start/End: Complemental strand, 42843431 - 42843225
Alignment:
| Q |
125 |
tacattataaggtgatgtgggtcggggagagaaatttgctctaccaggtagcaacacattaacaaatttattattattttttcattgaaaaagaaaagca |
224 |
Q |
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| T |
42843431 |
tacattataaggtgatgtgggtcggggagagaaatttgctctaccaggtagcaacacattaacaaatttattattattttttcattgaaaaagaaaagca |
42843332 |
T |
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| Q |
225 |
tacaacggtagataattgttttctcttttcatctttctccaaaactacttcaccttcccctgtttaacccaaaaccgtttcactccattttttcaccggt |
324 |
Q |
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| T |
42843331 |
tacaccggtagataattgttttctcttttcatctttctccaaaactacttcaccttcccctgtttcacccaaaaccgtttcactccattttttcaccggt |
42843232 |
T |
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| Q |
325 |
tccaact |
331 |
Q |
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| T |
42843231 |
tccaact |
42843225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 45196696 - 45196639
Alignment:
| Q |
272 |
cttcaccttcccctgtttaacccaaaaccgtttcactccattttttcaccggttccaa |
329 |
Q |
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| T |
45196696 |
cttcaccttcccctgattcacccaaaaccgtttcactccattttttcaccggttccaa |
45196639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 45196794 - 45196742
Alignment:
| Q |
192 |
ttattattattttttcattgaaaaagaaaagcatacaacggtagataattgtt |
244 |
Q |
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| T |
45196794 |
ttattattattttttcatcgaaaaagaaaagcatctaacggtagataattgtt |
45196742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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