View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20262_high_8 (Length: 683)
Name: NF20262_high_8
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Original strand, 33233964 - 33234504
Alignment:
| Q |
18 |
agaggttttcttgtgttggaagaaatgagaaagagtggaaatgctgaaaagccttgcaaggtaactgtagcacactattatgctgttagtattagaaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33233964 |
agaggttttcttgtgttggaagaaatgagaaagagtggaaatgctgaaaagccttgcaaggtaactgtagcacactattatgctgttagtattagaaatt |
33234063 |
T |
|
| Q |
118 |
tgtttagttataaaatagatattggtctttctatgattgtaatgattcaaccatcaagtgaagttggtttggatattacagtgcatggcccttctcaaca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33234064 |
tgtttagttataaaatagatattggtctttctatgattgtaatgattcaaccatcaagtgaagttggtttggatattaccgtgcatggcccttctcaaca |
33234163 |
T |
|
| Q |
218 |
ccctgctaaagcgttacattccatgtttcatgaagtactgaaaactgggatttggaagcccacaaaatgctctcattgtgctactatgattagagatcat |
317 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33234164 |
ccctgctaaagcattacattccatgtttcatgaagtactgaaaactgggatttggaagcccacaaaatgctctcattgtgctagtatgattagagatcat |
33234263 |
T |
|
| Q |
318 |
agtgattcagagagtgaagactgtgatgactttctaccaccacatgttcatggtcttagaaaaaatgtacaaagcattatagacaatggtggtgtggtta |
417 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33234264 |
agtgattcagagagtgaagattgtgatgattttctaccaccacatgttcatggtcttagaaaaaatgtgcaaagcattatagacaatggtggtgtggtta |
33234363 |
T |
|
| Q |
418 |
agggtaacaataatggtaatttgtatgtgcacaaactttatgttagaagatcatcttgattatcttttgtttacttgaataataaatttctatcttgtct |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33234364 |
agggtaacaataatggtaatttgtatgtgcacaagctttatgttagaagatcatcttgattatcttttgtttacttgaataaaaaatttctatcttgtct |
33234463 |
T |
|
| Q |
518 |
gctttgcaagaatgtaggataactagtattataggcttgta |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33234464 |
gctttgcaagaatgtaggataactagtattataggcttgta |
33234504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 574 - 673
Target Start/End: Original strand, 33234488 - 33234584
Alignment:
| Q |
574 |
agtattataggcttctaacatatatgataattatgggtgtgctttaagttttatattattacatacgtgtacttcctctagtcctttgattataatcatt |
673 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33234488 |
agtattataggcttgtaacatatatgctaat---gtgtgtgctttaagttttatattattacatacgtgtacttcctctagtcctttgattataatcatt |
33234584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University