View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_81 (Length: 336)
Name: NF20262_high_81
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_81 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 39846732 - 39846929
Alignment:
| Q |
1 |
atacatggatgtcaaatcagagagataccactctatgaatcatgactagaaatgcgattatttatatattggtagagatgttactgagttaatgttaatg |
100 |
Q |
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| T |
39846732 |
atacatggatgtcaaatcagagagataccactctatgaatcatgactagaacagcgattatttatatattggcagagatgttactgagttaatgttaatg |
39846831 |
T |
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| Q |
101 |
agctgtaattttaaatttgtaaataactaataataaaattgaaattttacattttcctaatacacatgcaagatatatgacttgaaaatatgttttga |
198 |
Q |
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| T |
39846832 |
agctgtaattttacatttgtaaataactaataataaaattgaaattttacatttttctaatacacatgcaagatatatgacttgaaaatatgttttga |
39846929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 224 - 319
Target Start/End: Original strand, 39846898 - 39846993
Alignment:
| Q |
224 |
tgcaacatatatgacttaaaaatatgttttgaagttgggaaatctatcatcttacatataggtttcttaagagttggattttagtagagcattatg |
319 |
Q |
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| T |
39846898 |
tgcaagatatatgacttgaaaatatgttttgaagttgggaaatctatcatcttacatataggtttcttaagagttggatcttagtagagcattatg |
39846993 |
T |
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