View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_93 (Length: 293)
Name: NF20262_high_93
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_93 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 38 - 276
Target Start/End: Complemental strand, 55246347 - 55246107
Alignment:
| Q |
38 |
tatgtttctcttgtcttccttggcttcatcgtaatcatcattatccttatcaacaaccttttaatttctcagatctaaacaaacctcnnnnnnntctaca |
137 |
Q |
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| T |
55246347 |
tatgtttctcttgtcttccttggcttcatcgtaatcatcattatccttatcaacaaccttttaatttctcagatctaaacaaacctcaaaaaaatctaca |
55246248 |
T |
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| Q |
138 |
attattggacc--nnnnnnnnacaacatttctatccttggacttcattgcagaaccnnnnnnnnacaacatttctacaattattacccatttgataaagt |
235 |
Q |
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| T |
55246247 |
attattggaccttttttttttacaacatttctatccttggacttcatcgcagaaccttttttttacaacatttctacaattattacccatttgataaagt |
55246148 |
T |
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| Q |
236 |
tttgattttgacaaaattggttggtcctccatgattggtaa |
276 |
Q |
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| T |
55246147 |
tttgattttgacaaaattggttggtcctccatgattggtaa |
55246107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 1634675 - 1634621
Alignment:
| Q |
220 |
acccatttgataaagttttgattttgacaaaattggttggtcctccatgattggt |
274 |
Q |
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| T |
1634675 |
acccatttgataaagttttgattttgacaaaattggttggtcctccatgattggt |
1634621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 48846854 - 48846911
Alignment:
| Q |
220 |
acccatttgataaagttttgattttgacaaaat---tggttggtcctccatgattggt |
274 |
Q |
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| T |
48846854 |
acccatttgataaagttttgattttgacaaaattggtggttggtcctccatgattggt |
48846911 |
T |
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