View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_high_98 (Length: 277)
Name: NF20262_high_98
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_high_98 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 3015163 - 3014916
Alignment:
| Q |
16 |
atataactaggaaaatttatgacaactagtataactatataaacatatgttatagataagctttcaattcatggcattataattgttggtatctcaaaat |
115 |
Q |
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| T |
3015163 |
atataactaggaaaatttatgacaactagtataactatataaacatatgttatagataagctttcaattcatggcattataattgttggtatctcaaaat |
3015064 |
T |
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| Q |
116 |
ctgttactagtctttataagagtttcttgcagcattctgtctgttacagtctgttatattctgttaactaggaaataattaatgctacaattggttaa-- |
213 |
Q |
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| T |
3015063 |
ctgttactagtctttataagagtttcttgcagcattctgtctgttacagtctgttatgttctgttaactaggaaataattaatgctacaattggttaata |
3014964 |
T |
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| Q |
214 |
tataatatattaggaattgatgttttgagttgaacaggttggagaatg |
261 |
Q |
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| T |
3014963 |
tataatatattaggaatttatgttttgagttgaacaggttggagaatg |
3014916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 2996518 - 2996464
Alignment:
| Q |
35 |
tgacaactagtataactatataaacatatgttatagataagctttcaattcatgg |
89 |
Q |
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| T |
2996518 |
tgacaactagtttaactatataaacatatgttataagtaagttttcaattcatgg |
2996464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 11327301 - 11327260
Alignment:
| Q |
220 |
atattaggaattgatgttttgagttgaacaggttggagaatg |
261 |
Q |
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||||||| | |||||||||||| ||||||||||||||||||| |
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| T |
11327301 |
atattagaacttgatgttttgacttgaacaggttggagaatg |
11327260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 20064113 - 20064154
Alignment:
| Q |
220 |
atattaggaattgatgttttgagttgaacaggttggagaatg |
261 |
Q |
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||||||| | |||||||||||| ||||||||||||||||||| |
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| T |
20064113 |
atattagaacttgatgttttgacttgaacaggttggagaatg |
20064154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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