View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20262_low_10 (Length: 671)
Name: NF20262_low_10
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_10 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 544; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 24 - 640
Target Start/End: Complemental strand, 25384552 - 25383937
Alignment:
| Q |
24 |
tggtaataatttaagaaaatgaattatgagaacggaatcacatgtgtcagtgtcgtgtcggtgtcagacaccggaaacacctttgattagagctgttggt |
123 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
25384552 |
tggtaataatttaaaaaaatgaattatgggaacggaatcacatgtgtcagtgtcgtgccagtgtcagacaccggaaacacctttgattagagctgttggt |
25384453 |
T |
|
| Q |
124 |
gctacataacatttccacctcactcaatcataaggtatgcatcaaattaacaacattgaaattcaatttactagaaagccatagcacaaaccctaaactc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25384452 |
gctacataacatttccacctcactcaatcataaggtatgcatcaaattaacaacattgaaattcaatttactagaaagccatagcacaaaccctaaactc |
25384353 |
T |
|
| Q |
224 |
ctgatcagaagatacaattgaatcaatgacacgcaattcagcaaaaagatacacaaagaaacataacaaaatccagaagttcaattacaatgtaatttaa |
323 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25384352 |
ctgatcagaagatgcaattgaatcaatgacacgcaattcagcaaaaagatacacaaagaagcataacaaaatccagaagttcaattacaatgtaatttaa |
25384253 |
T |
|
| Q |
324 |
aacacaaacataacatttaaatcaaattaatcaatagatacattaaaaaatagaagttaaaagatacgttacatcaagtaattcaagaagcatatcagct |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25384252 |
aacacaaacataacatttaaatcaaattaatcaatagatacattaaaaaatagaagttaaaagatacgttacatcaagtaattcaagaagcatatcagct |
25384153 |
T |
|
| Q |
424 |
gaagaagctaggtttttggatagttttctgcccaaatgtctaagtctcttcactactgtatctctgtcatcagaggaagccannnnnnnnnnctttctca |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
25384152 |
gaagaagctaggtttttggatagttttctgcccaaatgtctaagtctcttcactactgtatctctgtcatcagaggaagccattttttttt--tttctca |
25384055 |
T |
|
| Q |
524 |
gaaagttaccacactaaaattatgcactttatagccccaaatgtaccaatttacaactcagcaaaactcaatttatgggttta-tggctaagtatttgac |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
25384054 |
gaaagttaccacactaaaattatgcactttatagccccaaatgtaccaatttacaactcagcaaaactcaatttatgggtttattggctaagtgtttgac |
25383955 |
T |
|
| Q |
623 |
atgcaagcagaaaatcac |
640 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
25383954 |
atgcaagcagaaaatcac |
25383937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 16551276 - 16551242
Alignment:
| Q |
60 |
atcacatgtgtcagtgtcgtgtcggtgtcagacac |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
16551276 |
atcacatgtgtcagtgtcgtgtcggtgtcagacac |
16551242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 19608443 - 19608490
Alignment:
| Q |
59 |
aatcacatgtgtcagtgtcgtgtcggtgtcagacaccggaaacacctt |
106 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||||| |||||||||||| |
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|
| T |
19608443 |
aatcacatgtgttagtattgtgtcggtgtcagacatcggaaacacctt |
19608490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 35198285 - 35198213
Alignment:
| Q |
24 |
tggtaataatttaagaaaatgaattatgagaacggaatcacatgtgtcagtgtcgtgtcggtgtcagacaccg |
96 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| | ||||||||||| | ||||||||| | |||| ||||||| |
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|
| T |
35198285 |
tggtcataatttaagaaaatgaattaattgaatgtaatcacatgtgacggtgtcgtgttgttgtcggacaccg |
35198213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 15 - 640
Target Start/End: Complemental strand, 843204 - 842577
Alignment:
| Q |
15 |
cacagacactggtaataatttaagaaaatgaattatgagaacggaatcacatgtgtcagtgtcgtgtcggtgtcagacaccggaaacacctttgattaga |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
843204 |
cacagacactggtaataatttgagaaaatgaattatttgaacgtaatcacatgtgagagtgtcgtgtcgg------acaccggaaacacctttgatcaga |
843111 |
T |
|
| Q |
115 |
gctgttggtgctacataacatttccacctcactcaatcataaggtatgcatcaaattaacaacattgaaattcaatttactagaaagccatagcacaaac |
214 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||| |||||| ||| ||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
843110 |
gctgttggtgccacataacatttccacctcactcaaacataaggtttgcatctaatcaacaacattgaaattcaatttactaaaaaaccatagcacaaac |
843011 |
T |
|
| Q |
215 |
cctaaac---tcctgatcagaagatacaattgaatcaatgacacgcaattcagcaaaaagatacacaaagaaacataacaaaatccagaagttcaattac |
311 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||| ||||||||||||| |||||||||||||||| |
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|
| T |
843010 |
cctaaactcctcctgatcagaagatacaattgaatcaatgacactcaattcagcaaagatatacagaaa-aaacataacaaaaaccagaagttcaattac |
842912 |
T |
|
| Q |
312 |
aatgtaatttaaaacacaaacat-aacatttaaatcaaattaatcaatagatacattaaaaaatagaa-----gttaaaagatacgttacatcaagtaat |
405 |
Q |
| |
|
||||||||||| ||||||| || || | || |||||||||||||||||||||||||||||| ||| | |||||||||| |||||||||||||| |
|
|
| T |
842911 |
aatgtaatttaggacacaaaaatcaatagatatatcaaattaatcaatagatacattaaaaaaaggaagaaaggataaaagatacattacatcaagtaat |
842812 |
T |
|
| Q |
406 |
tcaagaagcatatcagctgaagaagctaggtttttggatagttttctgcccaaatgtctaagtctcttcactactgtatctctgtcatcagaggaagcca |
505 |
Q |
| |
|
|||||||| |||||| | ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
842811 |
tcaagaagaatatcaacagaagaagctagatttttggatagttttctccccaaatgtctaagactcttcactactgtatctctgtcatcagaagaagcca |
842712 |
T |
|
| Q |
506 |
nnnnnnnnnnctttctcagaaagttaccacactaaaattatgcactttatagccccaaatgtaccaatttacaactcagcaaaactcaatttatgggttt |
605 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
842711 |
ttttttttttatttctccgaaagttaccacactaaaattatgcactttatagccccaaatgtactaatttacaactcagcaaaactctatttatgggttt |
842612 |
T |
|
| Q |
606 |
atggctaagtatttgacatgcaagcagaaaatcac |
640 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
842611 |
atggctaagtgtttgacatgcaagcagaaaatcac |
842577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 569 - 636
Target Start/End: Complemental strand, 10452958 - 10452891
Alignment:
| Q |
569 |
ccaatttacaactcagcaaaactcaatttatgggtttatggctaagtatttgacatgcaagcagaaaa |
636 |
Q |
| |
|
||||| |||||||||||||||||||||||| || |||||| |||||| |||||||||||||||||||| |
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|
| T |
10452958 |
ccaatgtacaactcagcaaaactcaatttaaggatttatgactaagtgtttgacatgcaagcagaaaa |
10452891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 382 - 455
Target Start/End: Complemental strand, 10453151 - 10453078
Alignment:
| Q |
382 |
aaaagatacgttacatcaagtaattcaagaagcatatcagctgaagaagctaggtttttggatagttttctgcc |
455 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||| ||||| | |||||||| ||||||||||| || |||||||| |
|
|
| T |
10453151 |
aaaaaatacattacatcaagtatttcaagaagcttatcaacagaagaagcaaggtttttggacagctttctgcc |
10453078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 54779169 - 54779228
Alignment:
| Q |
37 |
agaaaatgaattatgagaacggaatcacatgtgtcagtgtcgtgtcggtgtcagacaccg |
96 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
54779169 |
agaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccg |
54779228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 22745604 - 22745527
Alignment:
| Q |
19 |
gacactggtaataatttaagaaaatgaattatgagaacggaatcacatgtgtcagtgtcgtgtcggtgtcagacaccg |
96 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| |||| ||| |||||| |||||||| ||| |||||| ||||||| |
|
|
| T |
22745604 |
gacactggtaatgatttgagaaaatgaattatttaaacgtaatgacatgtttcagtgtcatgttggtgtcggacaccg |
22745527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 10341463 - 10341495
Alignment:
| Q |
59 |
aatcacatgtgtcagtgtcgtgtcggtgtcaga |
91 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
10341463 |
aatcacatgtgtcactgtcgtgtcggtgtcaga |
10341495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 21768609 - 21768698
Alignment:
| Q |
22 |
actggtaataatttaagaaaatgaattatgagaacggaatcacatgtgtcagtgtcgtgtcggtgtcagacaccggaaacacctttgattagag |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| || |||||||||| || |||| |||||||||| || | ||||||||||| |||| |
|
|
| T |
21768609 |
actggtaataatttgagaaaatgaattatttgaacgtaaccacatgtgtcggtatcgt----gtgtcagacatcgaacacacctttgatcagag |
21768698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 47542535 - 47542598
Alignment:
| Q |
19 |
gacactggtaataatttaagaaaatgaattatgagaacggaatcacatgtgtcagtgtcgtgtc |
82 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||| | ||||||||||||| |||| ||||| |
|
|
| T |
47542535 |
gacactggtaataatttgagaaaatgaactatttgaatgtaatcacatgtgtcggtgttgtgtc |
47542598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 18268063 - 18268002
Alignment:
| Q |
20 |
acactggtaataatttaagaaaatgaattatgagaacggaatcacatgtgtcagtgtcgtgt |
81 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||| ||||||||||||| |||| |||| |
|
|
| T |
18268063 |
acactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgttgtgt |
18268002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 16567338 - 16567384
Alignment:
| Q |
62 |
cacatgtgtcagtgtcgtgtcggtgtcagacaccggaaacacctttg |
108 |
Q |
| |
|
||||||||||||| |||||| ||||||| |||||||| ||||||||| |
|
|
| T |
16567338 |
cacatgtgtcagtatcgtgttggtgtcaaacaccggacacacctttg |
16567384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 87
Target Start/End: Original strand, 2252490 - 2252518
Alignment:
| Q |
59 |
aatcacatgtgtcagtgtcgtgtcggtgt |
87 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2252490 |
aatcacatgtgtcagtgtcgtgtcggtgt |
2252518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 26462704 - 26462632
Alignment:
| Q |
19 |
gacactggtaataatttaagaaaatgaattatgagaacggaatcacatgtgtcagtgtcgtgtcggtgtcaga |
91 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||| | ||||||||||||| | || |||||| ||||||| |
|
|
| T |
26462704 |
gacactgataataatttaagaaaatgaaataattgaatgtaatcacatgtgtcggagtagtgtcgatgtcaga |
26462632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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