View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_100 (Length: 288)
Name: NF20262_low_100
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_100 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 40870955 - 40870681
Alignment:
| Q |
10 |
aaaaatatagtatttagtcaattttcaatattaattcaaaatataaggtaatcctcacatataaatttgtattgactcctgcagtataacctggttgaag |
109 |
Q |
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| T |
40870955 |
aaaaacatagtatttagtcaattttcaacattaattcaaaatataaggtaatcctcacatataaatttgtattgactcctgcagtataacctggttgaag |
40870856 |
T |
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| Q |
110 |
cttaaccgcagtaccaaaatatccagatttataagagtgatatgacttgaatccactccctgtgttgcaaagaaatgcttagaagtggtaagaatccata |
209 |
Q |
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| T |
40870855 |
cttaaccgcagtaccaaaatatccagatttataagagtgatatgacttgaatccactccctgtgttgcaaagaaatgcttagaagtggtaagaatccata |
40870756 |
T |
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| Q |
210 |
ctaaaataataatagattattgcattatatggtatgcatgtactatgtaagtagttgcagagactaatttctcaaatta |
288 |
Q |
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| T |
40870755 |
ctaaaataataatagatttttgcattatatggt----atgtactatgtaagtagttgcagagactaatttctcaaatta |
40870681 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 21085410 - 21085506
Alignment:
| Q |
84 |
actcctgcagtataacctggttgaagcttaaccgcagtaccaaaatatccagatttataagagtgatatgacttgaatccactccctgtgttgcaaa |
180 |
Q |
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||||| |||||||| || || |||||||||| |||| |||||| ||||| ||||||||||| ||| ||||||||||||||| ||| |||| |||| |
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| T |
21085410 |
actccagcagtatagccaggatgaagcttaattgcagcaccaaagtatccggatttataagaatgaagtgacttgaatccactacctatgtttcaaa |
21085506 |
T |
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