View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_101 (Length: 284)
Name: NF20262_low_101
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_101 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 14988844 - 14988569
Alignment:
| Q |
1 |
tgaagcaactaacatttgaattgtataataatctatttgatgaccttaatttgtattaatttgtattgcaggatcacacgaattgctaaatgatcggttg |
100 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
14988844 |
tgaagcaactaacatttgaattatatagtaatctatttgatgaccttaatttgtatt----------gtaggatcacacgaattgctaaatgatcggttg |
14988755 |
T |
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| Q |
101 |
atgatgtcttctgtgtggaaacaagtacctcatctttaagtgagcaaatcaattgatttgtagtttttagcattctaaaattttggtgcttactttgtga |
200 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14988754 |
atgatgtcttctgtgtggaaccaagtacctaatctttaagtgagcaaatcaattgatttgtagtttttagcattctaaaattttggtgcttactttgtga |
14988655 |
T |
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| Q |
201 |
ataa--nnnnnnnnaagtaaatgttaatggttaatttgttaaggggagaagtttgctagtaacagagatagaatcccagaccttct |
284 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14988654 |
ataattttttttttaagtaaatgttaatggttaatttgttaaggggagaagtttgctagtaacagagatggaatcccagaccttct |
14988569 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 3092586 - 3092532
Alignment:
| Q |
135 |
tttaagtgagcaaatcaatt-gatttgtagtttttagcattctaaaattttggtg |
188 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||| |||| ||||||| |
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| T |
3092586 |
tttaagtgagaaaatcaatttgatttgtagtttttagcatttaaaaaatttggtg |
3092532 |
T |
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