View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_102 (Length: 283)
Name: NF20262_low_102
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_102 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 17521595 - 17521328
Alignment:
| Q |
1 |
caccaccttgtcaagaataatttccacactacttcgttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattc |
100 |
Q |
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| T |
17521595 |
caccaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattc |
17521496 |
T |
|
| Q |
101 |
aagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatatcatacttatctttcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
17521495 |
aagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatac--tatcatatttatctttcat |
17521398 |
T |
|
| Q |
201 |
gtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521397 |
gtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
17521328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 270
Target Start/End: Original strand, 14812588 - 14812852
Alignment:
| Q |
4 |
caccttgtcaagaataatttccacactacttcgttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaag |
103 |
Q |
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|||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812588 |
caccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaag |
14812687 |
T |
|
| Q |
104 |
ttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatatcatacttatctttcatgtc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
14812688 |
ttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatac--tatcatatttatctttcatgtc |
14812785 |
T |
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| Q |
204 |
caaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
270 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812786 |
caaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
14812852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 270
Target Start/End: Original strand, 15259583 - 15259847
Alignment:
| Q |
4 |
caccttgtcaagaataatttccacactacttcgttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaag |
103 |
Q |
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|||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259583 |
caccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtgattcaag |
15259682 |
T |
|
| Q |
104 |
ttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatatcatacttatctttcatgtc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
15259683 |
ttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatac--tatcatatttatctttcatgtc |
15259780 |
T |
|
| Q |
204 |
caaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259781 |
caaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacct |
15259847 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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