View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_low_103 (Length: 280)

Name: NF20262_low_103
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_low_103
NF20262_low_103
[»] chr3 (8 HSPs)
chr3 (57-272)||(3817589-3817804)
chr3 (57-268)||(5164568-5164779)
chr3 (107-268)||(8434170-8434334)
chr3 (57-251)||(27149098-27149293)
chr3 (57-92)||(5165391-5165426)
chr3 (57-92)||(8435461-8435496)
chr3 (57-92)||(27149989-27150024)
chr3 (10-47)||(14555011-14555048)
[»] chr6 (1 HSPs)
chr6 (57-269)||(31742046-31742258)
[»] chr7 (1 HSPs)
chr7 (57-175)||(48119331-48119450)
[»] chr5 (6 HSPs)
chr5 (10-49)||(37825837-37825876)
chr5 (11-49)||(37713566-37713604)
chr5 (10-49)||(37596294-37596333)
chr5 (10-49)||(37641845-37641884)
chr5 (14-47)||(37535074-37535107)
chr5 (14-42)||(37535047-37535075)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 57 - 272
Target Start/End: Complemental strand, 3817804 - 3817589
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaatt 156  Q
    ||||||||||| |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3817804 tactccctccgatcctttataaaagagacaatttgaaacttttttttttcctttttataagaaaatctctttaaatttaaactttattaaatatgtaatt 3817705  T
Q  157 ccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagccgtaca 256  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || || |||||||||||||||    
T  3817704 ccatttatacccttattaagttggagacatgcaacctattccaatgcaaatgcatttattttgatacatattccccatgttaaactactttagccgtaca 3817605  T
Q  257 cacagaccaacacatg 272  Q
    ||||||||||||||||    
T  3817604 cacagaccaacacatg 3817589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 57 - 268
Target Start/End: Original strand, 5164568 - 5164779
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaatt 156  Q
    ||||| ||||| ||||||||| |||||||||||| ||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5164568 tactctctccgatcctttatacaagagacaattttaaacttttttttttcctttttataagaaaatctctttaaatttaaactttattaaatatgtaatt 5164667  T
Q  157 ccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagccgtaca 256  Q
     ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||| |    
T  5164668 tcatttatacccttattaagttggagacatgcaacctattctaatgcaaatgcatttattttgatacatattccccatgttgaactactttagcagtaga 5164767  T
Q  257 cacagaccaaca 268  Q
    ||||||||||||    
T  5164768 cacagaccaaca 5164779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 107 - 268
Target Start/End: Original strand, 8434170 - 8434334
Alignment:
Q  107 ctttttataagaaaatctctttaaatttaaactttattaaata---tgtaattccatttatacccttattaagttggagacatacaacctattcctatgc 203  Q
    ||||||||||||| | |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  8434170 ctttttataagaatacctctttaaatttaaactttattaaatagtatgtaattccatttatacccttattaagttggagacatgcaacctattccaatgc 8434269  T
Q  204 aaatgcatttattatgatacatattccccatattgaattactttagccgtacacacagaccaaca 268  Q
    ||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  8434270 aaatgcatttagtttgatacatattccccatgttgaactactttagccgtacacacaaaccaaca 8434334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 57 - 251
Target Start/End: Original strand, 27149098 - 27149293
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnn-ggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaat 155  Q
    ||||||||||||||||||||| |||||||||||| ||||        ||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  27149098 tactccctccggtcctttatacaagagacaatttaaaacttttttttggtcctttttataagaaaatctctttaaattcaaactttatcaaatatgtaat 27149197  T
Q  156 tccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagcc 251  Q
    | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||| ||| ||||| || |||||||    
T  27149198 ttcatttatacccttattaagttggagacatgcaacctattccaatgcaaatgcatttattttggtacatattccacatgttgaactattttagcc 27149293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 5165426 - 5165391
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttga 92  Q
    ||||||||||||||||||||||||||||||||||||    
T  5165426 tactccctccggtcctttataaaagagacaatttga 5165391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 8435496 - 8435461
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttga 92  Q
    ||||||||||||||||||||||||||||||||||||    
T  8435496 tactccctccggtcctttataaaagagacaatttga 8435461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 27150024 - 27149989
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttga 92  Q
    ||||||||||||||||||||||||||||||||||||    
T  27150024 tactccctccggtcctttataaaagagacaatttga 27149989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 14555011 - 14555048
Alignment:
Q  10 attatactaattgacgataacattcatttattagtatc 47  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  14555011 attatactaattgacgataacattaattcattagtatc 14555048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 57 - 269
Target Start/End: Original strand, 31742046 - 31742258
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaatt 156  Q
    |||||||| ||||| |||||| ||||||||||||||||        |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31742046 tactcccttcggtcatttatacaagagacaatttgaaatattttttggtcttttttataagaaaatctctttaaatttaaactttattaaatatgtaatt 31742145  T
Q  157 ccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagccgtaca 256  Q
     ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  31742146 tcatttatacccttattaagttggagacatgcaacctattccaatgcaaatgcatttattttgatacatattccccatgttgaactactttagccgtaca 31742245  T
Q  257 cacagaccaacac 269  Q
    ||||| |||||||    
T  31742246 cacaggccaacac 31742258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 175
Target Start/End: Original strand, 48119331 - 48119450
Alignment:
Q  57 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnn-ggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaat 155  Q
    |||||||||||||||||| || |||||||||||||| ||        ||||||||||||||||||  ||||||||||||||||||||| ||||||  |||    
T  48119331 tactccctccggtcctttttataagagacaatttgagactttcttttggtcctttttataagaaacactctttaaatttaaactttatcaaatatacaat 48119430  T
Q  156 tccatttatacccttattaa 175  Q
    |||||||| | |||||||||    
T  48119431 tccatttaaaaccttattaa 48119450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 37825837 - 37825876
Alignment:
Q  10 attatactaattgacgataacattcatttattagtatctt 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37825837 attatactaattgacgataacattcatttattagtatctt 37825876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 37713566 - 37713604
Alignment:
Q  11 ttatactaattgacgataacattcatttattagtatctt 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37713566 ttatactaattgacgataacattcatttattagtatctt 37713604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 37596294 - 37596333
Alignment:
Q  10 attatactaattgacgataacattcatttattagtatctt 49  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  37596294 attatactaattgacgatatcattcatttattagtatctt 37596333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 37641845 - 37641884
Alignment:
Q  10 attatactaattgacgataacattcatttattagtatctt 49  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  37641845 attatactaattgacgagaacattcatttattagtatctt 37641884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 37535074 - 37535107
Alignment:
Q  14 tactaattgacgataacattcatttattagtatc 47  Q
    |||||||||||||||||||||||| |||||||||    
T  37535074 tactaattgacgataacattcattcattagtatc 37535107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 37535047 - 37535075
Alignment:
Q  14 tactaattgacgataacattcatttatta 42  Q
    |||||||||||||||||||||||||||||    
T  37535047 tactaattgacgataacattcatttatta 37535075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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