View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_105 (Length: 272)
Name: NF20262_low_105
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_105 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 22955710 - 22955466
Alignment:
| Q |
5 |
atatttgacttggggagaataatatcttgactagaggctgcctcatacacagtaaggatgtttttcataatttgagtctaacacacctcaaatctaataa |
104 |
Q |
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| T |
22955710 |
atatatgatttggggagaataatatcttgactagaggctgccttatacacagtaaggatgtttttcataatttgggtctaacgcacctcaactctaataa |
22955611 |
T |
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| Q |
105 |
atagaaaacaatcatcaacaaacaagtgttaagggaccagaggggctcccctacaaatagaagtgcaatggatataacccttctcctcagtgtggcgaat |
204 |
Q |
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| T |
22955610 |
atagaaaacaatcatcaacaaacaagtgttaagagaccagaggggctcccctacaaata-aagtgcaatggatataacccttctcctcagtatggcgaat |
22955512 |
T |
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| Q |
205 |
cagggaggaaaagccctccgcgcaaatgatgaagacataaggcgag |
250 |
Q |
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| T |
22955511 |
cagggaggaaaagccctccgcgcaaatgatgaacacatatggcgag |
22955466 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 9281857 - 9281750
Alignment:
| Q |
139 |
gaccagaggggctcccctacaaatagaagtgcaatggatataacccttctcctcagtgtggcgaatcagggaggaaaagccctccgcgcaaatgatgaag |
238 |
Q |
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| T |
9281857 |
gaccggaggggcgccccttcaaatagaagtgccatgggtatcgcccctctccttggcgtggggaattaaggaggacaagccctccacacaaatgatgaag |
9281758 |
T |
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| Q |
239 |
acataagg |
246 |
Q |
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| T |
9281757 |
atataagg |
9281750 |
T |
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