View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_108 (Length: 267)
Name: NF20262_low_108
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_108 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 10055846 - 10055607
Alignment:
| Q |
13 |
agatgaaccatgaggtaccacatagaaagacaaatagtgaaaggaagaatggcatgaactccacactctttgttttgatcactagtctctgcacacataa |
112 |
Q |
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| T |
10055846 |
agatgaaccatgaggtaccacatagaaagacaaatagtgaaaggaagaatggcatgaactccacactctttgttttgatcactagtctctgcacacataa |
10055747 |
T |
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| Q |
113 |
atattaagaaaataaattggacatcaacaactatttcatgatgaaaaatgaataaggacacattcctaaatgaattttttgtagggtatatagtatttta |
212 |
Q |
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| T |
10055746 |
atattaagaaaataaattggacatcaacaactatttcatgatgaaaaatgaataaggacacattcctaaatgaattttgtgtagggtttatagtatttta |
10055647 |
T |
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| Q |
213 |
aaagtgaatgatcatgtggaattcttacaataatgaaaac |
252 |
Q |
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| T |
10055646 |
aaagtgaatgatcatgtggaattcttacaataatgaaaac |
10055607 |
T |
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Back To:
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 40832548 - 40832597
Alignment:
| Q |
56 |
gaagaatggcatgaactccacactctttgttttgatcactagtctctgca |
105 |
Q |
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| T |
40832548 |
gaagaatggcatgaactccacactcttggttttgatcactaatctctgca |
40832597 |
T |
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