View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_low_109 (Length: 266)

Name: NF20262_low_109
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_low_109
NF20262_low_109
[»] chr4 (6 HSPs)
chr4 (133-256)||(22162363-22162487)
chr4 (70-105)||(22158427-22158462)
chr4 (70-105)||(40991736-40991771)
chr4 (72-105)||(26361449-26361482)
chr4 (70-102)||(8108957-8108989)
chr4 (70-102)||(10169790-10169822)
[»] chr1 (4 HSPs)
chr1 (70-105)||(26980409-26980444)
chr1 (70-105)||(11987624-11987659)
chr1 (70-103)||(3872780-3872813)
chr1 (72-105)||(39039504-39039537)
[»] chr8 (3 HSPs)
chr8 (70-103)||(28414016-28414049)
chr8 (72-105)||(16983392-16983425)
chr8 (69-105)||(41727428-41727464)
[»] chr7 (3 HSPs)
chr7 (69-102)||(25092807-25092840)
chr7 (70-103)||(14795131-14795164)
chr7 (70-103)||(15242123-15242156)
[»] chr3 (9 HSPs)
chr3 (69-105)||(5452206-5452242)
chr3 (70-105)||(18722603-18722638)
chr3 (70-105)||(20493592-20493627)
chr3 (70-105)||(28529251-28529286)
chr3 (69-102)||(55283203-55283236)
chr3 (74-106)||(15790520-15790552)
chr3 (69-105)||(29755498-29755534)
chr3 (70-102)||(40631194-40631226)
chr3 (69-105)||(48351434-48351470)
[»] chr2 (3 HSPs)
chr2 (69-105)||(12989189-12989225)
chr2 (70-105)||(32856286-32856321)
chr2 (70-103)||(45554567-45554600)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 133 - 256
Target Start/End: Original strand, 22162363 - 22162487
Alignment:
Q  133 ttataggaaaac-tgttcctgctcgtgtgttcctaaggtaacggttacaacttccgagtctcttgtacttgtgcactcttgctacaatcttaaaattctt 231  Q
    |||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22162363 ttataggaaaacctgttcccgctcgtgtattcctaaggtaacggttacaacttccaagtctcttgtacttgtgcactcttgctacaatcttaaaattctt 22162462  T
Q  232 ttcaaatctttttcatggattctct 256  Q
    |||||||||||||||||||||||||    
T  22162463 ttcaaatctttttcatggattctct 22162487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 22158427 - 22158462
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcattcct 105  Q
    ||||| ||||||||||||||||||||||||||||||    
T  22158427 agagaatgttgaaaagtgagtgttgttagcattcct 22158462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 40991736 - 40991771
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcattcct 105  Q
    ||||||||||||||||||||||||| ||||||||||    
T  40991736 agagagtgttgaaaagtgagtgttgctagcattcct 40991771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 26361449 - 26361482
Alignment:
Q  72 agagtgttgaaaagtgagtgttgttagcattcct 105  Q
    ||||||||||||||||||||||| ||||||||||    
T  26361449 agagtgttgaaaagtgagtgttgctagcattcct 26361482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 8108989 - 8108957
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcatt 102  Q
    ||||||||||||||||||||||||| |||||||    
T  8108989 agagagtgttgaaaagtgagtgttgctagcatt 8108957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 10169790 - 10169822
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcatt 102  Q
    ||||||||||||||||||| |||||||||||||    
T  10169790 agagagtgttgaaaagtgaatgttgttagcatt 10169822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 26980409 - 26980444
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcattcct 105  Q
    ||||||||||||||||||||||||||||||||||||    
T  26980409 agagagtgttgaaaagtgagtgttgttagcattcct 26980444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 11987659 - 11987624
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcattcct 105  Q
    ||||||||||||||||||||||||||||| ||||||    
T  11987659 agagagtgttgaaaagtgagtgttgttagtattcct 11987624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 3872780 - 3872813
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcattc 103  Q
    ||||||||||||||||||||||||| ||||||||    
T  3872780 agagagtgttgaaaagtgagtgttgctagcattc 3872813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 39039504 - 39039537
Alignment:
Q  72 agagtgttgaaaagtgagtgttgttagcattcct 105  Q
    ||||||||||||||||||||||| ||||||||||    
T  39039504 agagtgttgaaaagtgagtgttgctagcattcct 39039537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 28414016 - 28414049
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcattc 103  Q
    ||||||||||||||||||||||||||||||||||    
T  28414016 agagagtgttgaaaagtgagtgttgttagcattc 28414049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 16983425 - 16983392
Alignment:
Q  72 agagtgttgaaaagtgagtgttgttagcattcct 105  Q
    ||||||||||||||||||||||| ||||||||||    
T  16983425 agagtgttgaaaagtgagtgttgctagcattcct 16983392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 41727464 - 41727428
Alignment:
Q  69 aagagagtgttgaaaagtgagtgttgttagcattcct 105  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  41727464 aagagagtgttcaaaagtgagtgttgtcagcattcct 41727428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 25092807 - 25092840
Alignment:
Q  69 aagagagtgttgaaaagtgagtgttgttagcatt 102  Q
    ||||||||||||||||||||||||||||||||||    
T  25092807 aagagagtgttgaaaagtgagtgttgttagcatt 25092840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 14795164 - 14795131
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcattc 103  Q
    ||||||||||||||||||||||||| ||||||||    
T  14795164 agagagtgttgaaaagtgagtgttgctagcattc 14795131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 15242156 - 15242123
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcattc 103  Q
    ||||||||||||||||||||||||| ||||||||    
T  15242156 agagagtgttgaaaagtgagtgttgctagcattc 15242123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 5452206 - 5452242
Alignment:
Q  69 aagagagtgttgaaaagtgagtgttgttagcattcct 105  Q
    |||||||||||||||||||||||||| ||||||||||    
T  5452206 aagagagtgttgaaaagtgagtgttgctagcattcct 5452242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 18722603 - 18722638
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcattcct 105  Q
    ||||||||| ||||||||||||||||||||||||||    
T  18722603 agagagtgtagaaaagtgagtgttgttagcattcct 18722638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 20493592 - 20493627
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcattcct 105  Q
    ||||||||||||||||||||||||| ||||||||||    
T  20493592 agagagtgttgaaaagtgagtgttgctagcattcct 20493627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 28529286 - 28529251
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcattcct 105  Q
    ||||||||||||||||||||||||| ||||||||||    
T  28529286 agagagtgttgaaaagtgagtgttgctagcattcct 28529251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 55283203 - 55283236
Alignment:
Q  69 aagagagtgttgaaaagtgagtgttgttagcatt 102  Q
    ||||||||||| ||||||||||||||||||||||    
T  55283203 aagagagtgtttaaaagtgagtgttgttagcatt 55283236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 15790520 - 15790552
Alignment:
Q  74 agtgttgaaaagtgagtgttgttagcattcctg 106  Q
    ||||||||||||||||| |||||||||||||||    
T  15790520 agtgttgaaaagtgagttttgttagcattcctg 15790552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 29755534 - 29755498
Alignment:
Q  69 aagagagtgttgaaaagtgagtgttgttagcattcct 105  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  29755534 aagagaatgttgaaaagtgagtgttgctagcattcct 29755498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 40631226 - 40631194
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcatt 102  Q
    |||| ||||||||||||||||||||||||||||    
T  40631226 agagtgtgttgaaaagtgagtgttgttagcatt 40631194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 48351470 - 48351434
Alignment:
Q  69 aagagagtgttgaaaagtgagtgttgttagcattcct 105  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  48351470 aagagagtgttaaaaactgagtgttgttagcattcct 48351434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 12989225 - 12989189
Alignment:
Q  69 aagagagtgttgaaaagtgagtgttgttagcattcct 105  Q
    |||||||||||||||||||||||||| ||||||||||    
T  12989225 aagagagtgttgaaaagtgagtgttgctagcattcct 12989189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 32856286 - 32856321
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcattcct 105  Q
    |||||||||| |||||||||||||||||||||||||    
T  32856286 agagagtgttcaaaagtgagtgttgttagcattcct 32856321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 45554600 - 45554567
Alignment:
Q  70 agagagtgttgaaaagtgagtgttgttagcattc 103  Q
    ||||||||||||||||||||||||| ||||||||    
T  45554600 agagagtgttgaaaagtgagtgttgctagcattc 45554567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University