View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_11 (Length: 656)
Name: NF20262_low_11
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 641
Target Start/End: Original strand, 26008937 - 26009576
Alignment:
| Q |
1 |
acattattggaccgaatagtctttgaattgtgcatttccataaggagaagttcatcctcctattaaacaatgaaatattcaacttcataaagtagccaaa |
100 |
Q |
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| T |
26008937 |
acattgttggaccaaataatttttga-ttgtgcatttctataaggagaagttcatcctcccattaaacaatgaaatattcaacttcataaagtagccaaa |
26009035 |
T |
|
| Q |
101 |
acattatataagaaaattacaaataagatgatagctaacatctcttcaaatgactagtgtagcaaactactcttctcttcacacaagaagcaaaaggaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26009036 |
acattatataagaaaattacaaataagatgatagctaacatctcttcaaattactagtgtagcaaactactcttctattcacacaagaagcaaaaggaaa |
26009135 |
T |
|
| Q |
201 |
cataaaaaacaatttacaaaacaataaaatattttattgctctcaacttgcaattaattacaaggataaaattgcaaatcctctcaattataatttttgc |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26009136 |
cataaaaaacaatttacaaaacaataaaatattgtattgctctcaacttgcaattaattacaaggataaaattgcaaatcctctcaattataatttttgc |
26009235 |
T |
|
| Q |
301 |
atgtgaacattaaaaattgcaaacttactcaaagacattgaaatacccaatcaatgtacacccctatgccttagttgttgtggtggtgaagaaaattcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26009236 |
atgtgaacattaaaaattgcaaacttactcaaagacattgaaatacccaatcaatgtacacccctatgccttagttgttgtggtggtgaagaaaattcat |
26009335 |
T |
|
| Q |
401 |
actaactctccatattatgtttatttataataactctatctcttattttgttgtatttatgcaccnnnnnnnnnnacaagaaactaaaataattgtctga |
500 |
Q |
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| T |
26009336 |
actaactctccatattatgtttatttataataactctatctcttattttgttgtgtttatgcactttttttttttacaagaaactaaaataattgtctga |
26009435 |
T |
|
| Q |
501 |
tggatgtacctttgagacatcacatatattttttgaaataattgtctgatcatgcaatatattatatctgttcatagtataacacgtttaatcttgtctt |
600 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26009436 |
tggatgtacctttgagacatcacatatatttttttaaataattgtctgatcatgcaatatattatatctgttcatagtataacacgtttaatcttgtctt |
26009535 |
T |
|
| Q |
601 |
ttccaatccaataacgacattataaagcttgcccccacagg |
641 |
Q |
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| T |
26009536 |
ttccaatccaataacgacattataaagcttgcccccacagg |
26009576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 10438409 - 10438520
Alignment:
| Q |
25 |
gaattgtgcatttccataaggagaagttcatcctcctattaaacaatgaaatattcaacttcataaagtagccaaaacattatataagaaaattacaaat |
124 |
Q |
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|||||||||||| ||||||||| | |||||||||||| |||||| | ||||| ||||||| |||||||||| |||||||| ||| |||| |||||| |
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| T |
10438409 |
gaattgtgcattggtataaggagaggatcatcctcctatcaaacaaaggaatatccaacttc--aaagtagccataacattatctaa-aaaaacacaaat |
10438505 |
T |
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| Q |
125 |
aagatgatagctaac |
139 |
Q |
| |
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||| ||||| ||||| |
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| T |
10438506 |
aagttgataactaac |
10438520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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