View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_110 (Length: 265)
Name: NF20262_low_110
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_110 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 41843069 - 41842823
Alignment:
| Q |
19 |
cactttgcacttgatttctttatagatttaatatactaaaactttattttactcaccaaaaggaaaattccatgatgagattatgaggactagaccaaga |
118 |
Q |
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| T |
41843069 |
cactttgcacttgatttctttatagatttaatatactaaaactttattttactcaccaaagggaaaattccatgatgagattatgaggactagaccaaga |
41842970 |
T |
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| Q |
119 |
ggctcagcaacaatttctgcacttgaaagtagtgctatttggggcagtttagcctgttaagttgaaaataataaggcataacaataaagtatatagttat |
218 |
Q |
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| T |
41842969 |
ggctcagcaacaatttctgcacttgaaagtagtgctatttggggcagtttagcctgttaagttgaaaataataaggcataacaataaagtatatagttat |
41842870 |
T |
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| Q |
219 |
ggaattctttaatttcatgtaaaagtatggtgcaattgttcttattt |
265 |
Q |
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| T |
41842869 |
ggaattctttaatttcatgtaaaagtatggtgcaattgttcttattt |
41842823 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 24399167 - 24399079
Alignment:
| Q |
69 |
actcaccaaaaggaaaattccatgatgagattatgaggactagaccaagaggctcagcaacaatttctgcacttgaaagtagtgctatt |
157 |
Q |
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| T |
24399167 |
actcaccaaagggcaaattccaagatgaaataatgaggacgagacccaaaggctcatgaacaatttctgcacttgaaagcaatgctatt |
24399079 |
T |
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