View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_low_111 (Length: 262)

Name: NF20262_low_111
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_low_111
NF20262_low_111
[»] chr8 (6 HSPs)
chr8 (9-244)||(8541585-8541821)
chr8 (51-186)||(28259544-28259679)
chr8 (22-126)||(24926788-24926893)
chr8 (9-107)||(6887166-6887264)
chr8 (51-106)||(13581983-13582038)
chr8 (21-108)||(28290334-28290421)
[»] chr5 (3 HSPs)
chr5 (9-181)||(18179137-18179309)
chr5 (10-151)||(7741294-7741435)
chr5 (51-126)||(25681966-25682041)
[»] chr7 (6 HSPs)
chr7 (22-151)||(22334288-22334417)
chr7 (30-151)||(13709027-13709149)
chr7 (66-151)||(2964923-2965007)
chr7 (51-151)||(5637238-5637337)
chr7 (9-98)||(6724213-6724303)
chr7 (66-151)||(2978933-2979017)
[»] chr2 (4 HSPs)
chr2 (9-177)||(31274791-31274959)
chr2 (32-98)||(24438488-24438556)
chr2 (115-192)||(17844294-17844370)
chr2 (114-151)||(21847508-21847545)
[»] chr1 (3 HSPs)
chr1 (30-186)||(33175629-33175785)
chr1 (30-107)||(15297625-15297702)
chr1 (30-151)||(19256947-19257066)
[»] chr4 (2 HSPs)
chr4 (51-211)||(34332724-34332883)
chr4 (51-151)||(21078150-21078249)
[»] chr6 (7 HSPs)
chr6 (31-126)||(17859086-17859182)
chr6 (64-186)||(12971458-12971580)
chr6 (64-180)||(12967085-12967201)
chr6 (64-180)||(12969271-12969387)
chr6 (51-186)||(16440339-16440473)
chr6 (30-131)||(22557987-22558089)
chr6 (86-151)||(22558612-22558678)
[»] chr3 (3 HSPs)
chr3 (20-131)||(21828173-21828284)
chr3 (18-129)||(22990152-22990263)
chr3 (31-126)||(13912728-13912824)
[»] scaffold0190 (1 HSPs)
scaffold0190 (28-132)||(7012-7116)
[»] scaffold0280 (1 HSPs)
scaffold0280 (24-105)||(17306-17388)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 8541821 - 8541585
Alignment:
Q  9 gagatgaagtggtttgcaggattttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatccc 107  Q
    ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  8541821 gagatgaagtggtttgcaggattttaattattctgcccaatgcgagattaggttgttgtgattgaaaagtataacgaagattagggaatccatgaatccc 8541722  T
Q  108 ctctcctttctttgttggaattaacgcaattaattattagtttacaacctatctttgatttacgaaagtagaatatgactccatggtataatagtctaag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8541721 ctctcctttctttgttggaattaacgcaattaattattagtttacaacctatctttgatttacgaaagtagaatatgactccatggtataatagtctaag 8541622  T
Q  208 ttttggattgtataatctgaaatattcatcaccctac 244  Q
    |||||||||||||||||||||||||||||||||||||    
T  8541621 ttttggattgtataatctgaaatattcatcaccctac 8541585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 28259544 - 28259679
Alignment:
Q  51 gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttggaattaacgcaattaattattagttt 150  Q
    ||||||| |||||| |||||||||| |||||||  |||||| |||||| ||||||||||||| |||||||||||||||| | ||   |||||| ||||||    
T  28259544 gagattatgttgttatgattcagaattataacggtgattagagaatccttgaatcccctctcttttctttgttggaattcatgcggctaattactagttt 28259643  T
Q  151 acaacctatctttgatttacgaaagtagaatatgac 186  Q
    |  |||  |||| ||||||  ||||||| |||||||    
T  28259644 atgaccagtcttggatttaaaaaagtaggatatgac 28259679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 24926788 - 24926893
Alignment:
Q  22 ttgcaggattttaattgttctgctcaatgga-gattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttcttt 120  Q
    ||||||| |||||||||| |||| ||||  | |||||||||| ||||||||||| || ||| |  ||||||||||||| ||||||| |||| | ||||||    
T  24926788 ttgcagggttttaattgtcctgcccaatacaagattaggttggtgtgattcagatgtgtaatggcgattagggaatccttgaatcctctcttccttcttt 24926887  T
Q  121 gttgga 126  Q
    ||||||    
T  24926888 gttgga 24926893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 6887166 - 6887264
Alignment:
Q  9 gagatgaagtggtttgcaggattttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatccc 107  Q
    ||||||||| |||||| |||||||||||||| |||| ||||| |||||||| ||||||||| || || || || || |||||||||||||| | ||||||    
T  6887166 gagatgaag-ggtttgtaggattttaattgtcctgcccaatgcgagattagattgttgtgactcggacgtttaccggagattagggaatccttaaatccc 6887264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 13581983 - 13582038
Alignment:
Q  51 gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcc 106  Q
    ||||||||||| ||||||||||||||| |||||| | |||| |||||| |||||||    
T  13581983 gagattaggttattgtgattcagaagtgtaacgacgtttagagaatccttgaatcc 13582038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 28290334 - 28290421
Alignment:
Q  21 tttgcaggattttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccc 108  Q
    |||| ||| |||||||||| |||| ||||| |||||||| || ||||||||||||||| |||||  |||||||||| || |||| ||||    
T  28290334 tttgtagggttttaattgtcctgcccaatgtgagattagttt-ttgtgattcagaagtttaacggcgattagggaaaccttgaaccccc 28290421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 18179309 - 18179137
Alignment:
Q  9 gagatgaagtggtttgcaggattttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatccc 107  Q
    |||||||||||||||||||||||||||||||| | | ||||| ||||||| ||||||||||||||||||||||||   |||||  |||||| ||||||      
T  18179309 gagatgaagtggtttgcaggattttaattgtt-ttcccaatgcgagattaagttgttgtgattcagaagtataaccgtgattacagaatccttgaatcat 18179211  T
Q  108 ctctcctttctttgttggaattaacgcaattaattattagtttacaacctatctttgatttacgaaagtagaat 181  Q
     ||| ||||||||||||  ||||| |   |||||||||||||||  || | ||||||||| | |||||||||||    
T  18179210 gtcttctttctttgttgatattaatgtcgttaattattagtttatgacttgtctttgattcatgaaagtagaat 18179137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 7741294 - 7741435
Alignment:
Q  10 agatgaagtggtttgcaggattttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccc 108  Q
    |||||||||||||| || ||||||||||||  ||| ||||| || |||||  ||||||||||||||||| |||||  |||||   ||||| |||||||||    
T  7741294 agatgaagtggtttacaagattttaattgtcttgcccaatgcgaaattagtatgttgtgattcagaagtttaacgtcgattacaaaatccttgaatcccc 7741393  T
Q  109 tctcctttctttgttggaattaacgcaattaattattagttta 151  Q
     || || ||||||||||| ||||| |  || ||||||||||||    
T  7741394 -cttctgtctttgttggacttaactcggttgattattagttta 7741435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 25682041 - 25681966
Alignment:
Q  51 gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttgga 126  Q
    |||||||| ||  ||||||||| | || |||| | ||||||||||||| |||||||||||| | ||||||||||||    
T  25682041 gagattagatttgtgtgattcaaatgtgtaacaatgattagggaatccttgaatcccctcttcattctttgttgga 25681966  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 22334288 - 22334417
Alignment:
Q  22 ttgcaggattttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttcttt 120  Q
    ||||||| ||||||||||||||| ||||| ||||||||||| |  ||||||| |||  |||||  ||||||||||||| | ||||||| |||| | ||||    
T  22334288 ttgcagggttttaattgttctgcccaatgcgagattaggttttgttgattcaaaagagtaacggtgattagggaatcctttaatcccccctccgt-cttt 22334386  T
Q  121 gttggaattaacgcaattaattattagttta 151  Q
    ||||||| |||| | ||||||||||||||||    
T  22334387 gttggaactaactcgattaattattagttta 22334417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 13709149 - 13709027
Alignment:
Q  30 ttttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttgg-aa 127  Q
    ||||||||||  || |||||| ||||||| ||| ||||||||| ||||| |||||| ||||||||||||| ||||||||||||  | |||||||||| ||    
T  13709149 ttttaattgtcttgttcaatgcgagattatgtttttgtgattcggaagtgtaacgacgattagggaatccttgaatcccctct-ttgtctttgttggaaa 13709051  T
Q  128 ttaacgcaattaattattagttta 151  Q
    |||||   ||||||||||||||||    
T  13709050 ttaactggattaattattagttta 13709027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 2964923 - 2965007
Alignment:
Q  66 tgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttggaattaacgcaattaattattagttta 151  Q
    |||||||||||| ||| || ||||| ||||||  |||||| || |||| | ||||||| |||||||| ||||||||||||||||||    
T  2964923 tgattcagaagtgtaatgacgattaaggaatcattgaatctcccctccgt-ctttgtttgaattaactcaattaattattagttta 2965007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 5637337 - 5637238
Alignment:
Q  51 gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttggaattaacgcaattaattattagttt 150  Q
    |||||||||||| | ||||||||| |  |||||| |||||| |||||| |||||||||  | | | ||||||||||||||||||| ||| ||| ||||||    
T  5637337 gagattaggttggtctgattcagatgcgtaacgacgattagagaatccttgaatccccctttcat-ctttgttggaattaacgcagttagttactagttt 5637239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 6724213 - 6724303
Alignment:
Q  9 gagatgaagtggtttgcaggattttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatcc 98  Q
    |||||||||||||||| |||||||||||||| ||   ||||| |||||||  ||||||| ||| |||||||||| |  ||| |||||||||    
T  6724213 gagatgaagtggtttgtaggattttaattgtactttccaatgcgagattactttgttgtaatttagaagtataatggtgatcagggaatcc 6724303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 2978933 - 2979017
Alignment:
Q  66 tgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttggaattaacgcaattaattattagttta 151  Q
    |||||||||||| ||| || ||||| ||||||  |||||| || || | | ||||||| |||||||| ||||||||||||||||||    
T  2978933 tgattcagaagtgtaatgatgattaaggaatcattgaatctccccttcgt-ctttgtttgaattaactcaattaattattagttta 2979017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 31274959 - 31274791
Alignment:
Q  9 gagatgaagtggtttgcaggattttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatccc 107  Q
    |||||||||||| ||||| |||||||||| | |||| ||||| ||| |||||||||||||||||| ||||| || ||  |||||  ||||| |||||||     
T  31274959 gagatgaagtgggttgcaagattttaattttcctgc-caatgcgagtttaggttgttgtgattcataagtaaaaggacaattagataatccttgaatcct 31274861  T
Q  108 ctctcctttctttgttggaattaacgcaattaattattagtttacaacctatctttgatttacgaaagta 177  Q
    || |||||||||||||| |||||| ||  ||||  |||||||||   ||| ||||| |||||| ||||||    
T  31274860 ctatcctttctttgttgtaattaatgcggttaagcattagtttatggcctgtctttcatttacaaaagta 31274791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 24438556 - 24438488
Alignment:
Q  32 ttaattgttctgctcaa-tg-gagattaggttgttgtgattcagaagtataacgaagattagggaatcc 98  Q
    ||||||||||||||||| || ||||||||| |||||||||| ||||||||||||| ||||| |||||||    
T  24438556 ttaattgttctgctcaaatgcgagattagggtgttgtgatttagaagtataacgacgattaaggaatcc 24438488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 17844294 - 17844370
Alignment:
Q  115 ttctttgttggaattaacgcaattaattattagtttacaacctatctttgatttacgaaagtagaatatgactccatg 192  Q
    |||||||||||||||||  || |||||||||||||||  | || ||||||| | | |||||||| |||||||||||||    
T  17844294 ttctttgttggaattaatacagttaattattagtttatgatctgtctttga-tcaagaaagtaggatatgactccatg 17844370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 21847508 - 21847545
Alignment:
Q  114 tttctttgttggaattaacgcaattaattattagttta 151  Q
    |||||||||||||||||| || ||||||||||||||||    
T  21847508 tttctttgttggaattaatgcgattaattattagttta 21847545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 33175629 - 33175785
Alignment:
Q  30 ttttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttggaat 128  Q
    |||||||||| | |||||||  ||||||| |||| | ||| ||||| |  |||||| ||||||| ||||| |||||||||  ||||| ||||||||||||    
T  33175629 ttttaattgtcccgctcaatacgagattatgttggtttgactcagatgcgtaacgacgattaggaaatccttgaatccccattcctt-ctttgttggaat 33175727  T
Q  129 taacgcaattaattattagtttacaacctatctttgatttacgaaagtagaatatgac 186  Q
    ||| ||  |||||||||||||||  || | |||||||||||| ||| |||||||||||    
T  33175728 taatgcggttaattattagtttatgacttgtctttgatttacaaaattagaatatgac 33175785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 15297625 - 15297702
Alignment:
Q  30 ttttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatccc 107  Q
    |||||||||| |||| ||||| ||||||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||    
T  15297625 ttttaattgtactgcccaatgcgagattaggtt-ttgtgattcagaggtataacgatgattagggaatccttgaatccc 15297702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 19256947 - 19257066
Alignment:
Q  30 ttttaattgttctgctcaat-ggagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttggaat 128  Q
    ||||||||||||||||||||  ||||||| ||| |||||||| |||||| |||||| ||||| ||||||| |||| ||||| |||  ||||||||||| |    
T  19256947 ttttaattgttctgctcaatacgagattatgtt-ttgtgatttagaagtgtaacgacgattatggaatccttgaaccccct-tcc-gtctttgttggatt 19257043  T
Q  129 taacgcaattaattattagttta 151  Q
    ||||   ||| ||||||||||||    
T  19257044 taactagattgattattagttta 19257066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 211
Target Start/End: Original strand, 34332724 - 34332883
Alignment:
Q  51 gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttggaattaacgcaattaattattagttt 150  Q
    |||||||||||| | ||||||||| |  |||| |||||||||| |||| ||||| | |||| | ||||||||||||||| | ||  |||||||| |||||    
T  34332724 gagattaggttggtttgattcagatgcgtaacaaagattagggtatccttgaat-ctctcttccttctttgttggaattcatgcgcttaattatcagttt 34332822  T
Q  151 acaacctatc-tttgatttacgaaagtagaatatgactccatggtataatagtctaagtttt 211  Q
    |  |||| || |||||||||| ||||||||| |||||  |||| ||||||||  ||||||||    
T  34332823 atgacctgtcttttgatttac-aaagtagaacatgacctcatgatataatagcgtaagtttt 34332883  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 21078249 - 21078150
Alignment:
Q  51 gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttggaattaacgcaattaattattagttt 150  Q
    ||||||||||| |||||||| | |||||||||   | ||| | ||||| ||||| |||||| |  ||||||||||||||||| | ||| |||||||||||    
T  21078249 gagattaggtt-ttgtgatttaaaagtataacagcggttaagaaatccttgaataccctcttccgtctttgttggaattaactcgattgattattagttt 21078151  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 17859086 - 17859182
Alignment:
Q  31 tttaattgttctgctcaatgga-gattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttgga 126  Q
    |||||||| ||||| ||||| | |||||||||  ||||||||||| || |||||| ||||||||||||| |||||||| | | | ||||||||||||    
T  17859086 tttaattgctctgcccaatgcaagattaggtttgtgtgattcagatgtgtaacgatgattagggaatccttgaatcccatattccttctttgttgga 17859182  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 12971458 - 12971580
Alignment:
Q  64 tgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttggaattaacgcaattaattattagtttacaacctatcttt 163  Q
    |||| ||||||||||||| |  |||||| |||||| ||||||||| || | || ||||||||||||||| |  || ||||||||||||  ||||| ||||    
T  12971458 tgtggttcagaagtataatggcgattagagaatccttgaatcccc-cttccttatttgttggaattaactcggttgattattagtttatgacctaacttt 12971556  T
Q  164 -gatttacgaaagtagaatatgac 186  Q
     |||||| |||||||||| |||||    
T  12971557 cgatttaagaaagtagaacatgac 12971580  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 12967085 - 12967201
Alignment:
Q  64 tgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttggaattaacgcaattaattattagtttacaacctatcttt 163  Q
    |||| |||||||||||||    |||||| |||||| ||||||||| || | || ||||||||||||||| |  |||||||||||||||  ||||| ||||    
T  12967085 tgtggttcagaagtataatcgcgattagagaatccttgaatcccc-cttcattatttgttggaattaactcggttaattattagtttatgacctaacttt 12967183  T
Q  164 -gatttacgaaagtagaa 180  Q
     |||||| ||||||||||    
T  12967184 cgatttaagaaagtagaa 12967201  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 12969271 - 12969387
Alignment:
Q  64 tgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttggaattaacgcaattaattattagtttacaacctatcttt 163  Q
    |||| |||||||||||||    |||||| |||||| ||||||||| || | || ||||||||||||||| |  |||||||||||||||  ||||| ||||    
T  12969271 tgtggttcagaagtataatcgcgattagagaatccttgaatcccc-cttcattatttgttggaattaactcggttaattattagtttatgacctaacttt 12969369  T
Q  164 -gatttacgaaagtagaa 180  Q
     |||||| ||||||||||    
T  12969370 cgatttaagaaagtagaa 12969387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 186
Target Start/End: Complemental strand, 16440473 - 16440339
Alignment:
Q  51 gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttggaattaacgcaattaattattagttt 150  Q
    |||||||||| | | |||||||||  | ||||||  ||||||| |||| |||||||| | ||| | |||||||||||||||||   || |||||||||||    
T  16440473 gagattaggtaggtttgattcagatttgtaacgacaattagggtatccttgaatcccttttccgt-ctttgttggaattaacgtggttgattattagttt 16440375  T
Q  151 acaacctatctttgatttacgaaagtagaatatgac 186  Q
    |  || | ||||| ||||||||| |||| |||||||    
T  16440374 atgacatgtctttcatttacgaatgtaggatatgac 16440339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 22557987 - 22558089
Alignment:
Q  30 ttttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttggaat 128  Q
    ||||||||||  ||| ||||| |||||||| ||| | ||||||| | || |||||  |||||||| || | |||||||| | ||||||||||||||||||    
T  22557987 ttttaattgtcgtgcacaatgcgagattagattggtctgattcaaatgtttaacggtgattagggtattcttgaatcccatttcctttctttgttggaat 22558086  T
Q  129 taa 131  Q
    |||    
T  22558087 taa 22558089  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 22558612 - 22558678
Alignment:
Q  86 gattagggaatccatgaatcccctc-tcctttctttgttggaattaacgcaattaattattagttta 151  Q
    |||||||| |||| ||||||||| | || |||||||||||||||||   ||||||||||||||||||    
T  22558612 gattagggtatccttgaatccccccatcatttctttgttggaattataacaattaattattagttta 22558678  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 21828173 - 21828284
Alignment:
Q  20 gtttgcaggattttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttct 118  Q
    ||||||||| |||||  ||| || ||||||| ||||||||||| |||||||||| || ||||| || ||||||||||||| ||||||||| || |  |||    
T  21828173 gtttgcagggttttacatgtccttctcaatgcgagattaggtt-ttgtgattcataattataatgacgattagggaatccttgaatccccccttccatct 21828271  T
Q  119 ttgttggaattaa 131  Q
    || ||||||||||    
T  21828272 ttcttggaattaa 21828284  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 22990152 - 22990263
Alignment:
Q  18 tggtttgcagga-ttttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctt 115  Q
    |||||||||||  |||||||||| |||  ||||| |||||||||||||| || |||| | || ||||||| ||||||| |||| |||||||||||| | |    
T  22990152 tggtttgcaggtgttttaattgtcctgaacaatgcgagattaggttgtt-tgcttcaaaggtttaacgaatattagggtatccttgaatcccctctac-t 22990249  T
Q  116 tctttgttggaatt 129  Q
    ||||||||||||||    
T  22990250 tctttgttggaatt 22990263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 13912824 - 13912728
Alignment:
Q  31 tttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttgga 126  Q
    ||||||| |||| | ||||| ||||||| ||| |||| ||||||| || |||||  ||||||||||||| |||||||| ||| | || |||||||||    
T  13912824 tttaatttttctacccaatgtgagattaagtttttgtaattcagatgtgtaacggtgattagggaatccttgaatcccatcttcattatttgttgga 13912728  T

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Target: scaffold0190 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 7012 - 7116
Alignment:
Q  28 gattttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatcccctctcctttctttgttgga 126  Q
    |||||||||||| || ||||||| || ||||| || |||||||||| ||||||||||  || |||||||||| ||||||||   | || |||||||||||    
T  7012 gattttaattgtcctactcaatgtgatattagatt-ttgtgattcaaaagtataacggtgaatagggaatccttgaatccctcattctatctttgttgga 7110  T
Q  127 attaac 132  Q
    ||||||    
T  7111 attaac 7116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 17388 - 17306
Alignment:
Q  24 gcaggattttaattgttctgctcaatg-gagattaggttgttgtgattcagaagtataacgaagattagggaatccatgaatc 105  Q
    ||||||||||||||||| ||| ||||| |||||||  |||||||| ||| ||||||||||   ||||| ||||||| ||||||    
T  17388 gcaggattttaattgttatgcccaatgcgagattatattgttgtgcttctgaagtataacagcgattatggaatccttgaatc 17306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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