View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_118 (Length: 251)
Name: NF20262_low_118
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_118 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 28036060 - 28036288
Alignment:
| Q |
8 |
gtagataatactgtatgtctttgaacttaaaaatgaacatttagagttaaaagtagacgttttgatttgctttgctatagattatgaattgtacgaggat |
107 |
Q |
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| T |
28036060 |
gtagacaatattgtatgtctttgaacttaaaaatgaacatttagagttaaaagtagacgttttgatttgctttgctatagattatgaattgtacgaggat |
28036159 |
T |
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| Q |
108 |
tttaagaatctattcaagcaattaaatgatgagtccaaaggccacgatacttgtaatgagtatccaagttcagaaatcactgaagttcaagcatccggaa |
207 |
Q |
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| T |
28036160 |
tttaagaatctattcaagcaattaaatgatgagtccaaaggccacgatacttgtaatgagtatccaagttcagaaatcactgaagttcaagcatccggaa |
28036259 |
T |
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| Q |
208 |
acgagtttacttcttcacaggtcaatact |
236 |
Q |
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| T |
28036260 |
acgagtttacttcttcacaggtcaatact |
28036288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 28002810 - 28003038
Alignment:
| Q |
8 |
gtagataatactgtatgtctttgaacttaaaaatgaacatttagagttaaaagtagacgttttgatttgctttgctatagattatgaattgtacgaggat |
107 |
Q |
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| T |
28002810 |
gtagacaatattgtatgtctttgaacttaaaaatgaacatttagagttaaaagtagacgttttgatttgctttgctatagattatgaattgtacgtggat |
28002909 |
T |
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| Q |
108 |
tttaagaatctattcaagcaattaaatgatgagtccaaaggccacgatacttgtaatgagtatccaagttcagaaatcactgaagttcaagcatccggaa |
207 |
Q |
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| T |
28002910 |
ttgaagaatctattcaagcaattacatgatgagtccaaaggccacgatacttgtaatgaatatccaagttcagaaatcactgaagttcaagcatccggaa |
28003009 |
T |
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| Q |
208 |
acgagtttacttcttcacaggtcaatact |
236 |
Q |
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| T |
28003010 |
acgagtttacttcttcacaggtcaatact |
28003038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 27919004 - 27919223
Alignment:
| Q |
8 |
gtagataatactgtatgtctttgaacttaaaaatgaacatttagagttaaaagtagacgttttgatttgctttgctatagattatgaattgtacgaggat |
107 |
Q |
| |
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||||| |||| |||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||| |||||| ||||||||||| | || |
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| T |
27919004 |
gtagacaatattgtacgtctttgaacttgaaattgactatttagagttaaaagtagacgttttgatttactttgccatagattatgact---------at |
27919094 |
T |
|
| Q |
108 |
tttaagaatctattcaagcaattaaatgatgagtccaaaggccacgatacttgtaatgagtatccaagttcagaaatcactgaagttcaagca---tccg |
204 |
Q |
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| T |
27919095 |
ttgaagactctattcaagcaattacatgatgagttcaaaggccacgatacttgtaatgaatatccaagttcagaaatcactgaagttcaagcaacatctg |
27919194 |
T |
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| Q |
205 |
gaaacgagtttacttcttcacaggtcaat |
233 |
Q |
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| T |
27919195 |
gacatcagttgacttcttcacaggtcaat |
27919223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 11419693 - 11419855
Alignment:
| Q |
77 |
ctttgctatagattatgaattgtacgaggattttaagaatctattcaagcaattaaatgatgagtccaaaggccacgatacttgtaatgagtatccaagt |
176 |
Q |
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||||||||||||||||||||||||||| ||||| | ||| || |||||||||||| | | |||| |||||||||||||||||| |||||| ||||||||| |
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| T |
11419693 |
ctttgctatagattatgaattgtacgacgatttgacgaagctgttcaagcaattacacggtgaggccaaaggccacgatacttctaatgaatatccaagt |
11419792 |
T |
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| Q |
177 |
tcagaaatcactgaagttc---aagcatccggaaacgagtttacttcttcacaggtcaatact |
236 |
Q |
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| T |
11419793 |
tcagaaatcaccgaagctcgagaagcatcaagacacgagccgacttcttcacaggtcaatact |
11419855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 27979143 - 27979314
Alignment:
| Q |
28 |
ttgaacttaaaaatgaacatttagagttaaaagtagacgttttgatttgctttgctatagattatgaattgtacgaggattttaagaatctattcaagca |
127 |
Q |
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|||||||| ||||||| |||||||||||||||| ||| ||| ||||||||||| ||||||||| ||||| ||| |||||| | ||| |||||| | |
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| T |
27979143 |
ttgaacttgaaaatgacgatttagagttaaaagtggacattt-gatttgctttgatatagattacgaattctacatggatttgatgaactcattcaacga |
27979241 |
T |
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| Q |
128 |
attaaatgatgagtccaaaggccacgatacttgtaatgagtatccaagttcagaaatcactgaagttcaagca |
200 |
Q |
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||| ||||| ||||| ||||||||||||||||||| || ||||||||||| | || ||||||||||||||| |
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| T |
27979242 |
gttacatgataagtccgaaggccacgatacttgtaaggaacatccaagttcaaatattactgaagttcaagca |
27979314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 27460236 - 27460138
Alignment:
| Q |
140 |
gtccaaaggccacgatacttgtaatgagtatccaagttcagaaatcactgaagttcaag---catccggaaacgagtttacttcttcacaggtcaatac |
235 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||| |||||| ||| |||| ||| || |||| |||||||| ||||||||||| |
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| T |
27460236 |
gtccaaaggccatgatacttgtaatgaatatccaagttcagaaatcaccgaagttgaagcaacatcaggacacaagttgacttcttcgcaggtcaatac |
27460138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 8020314 - 8020470
Alignment:
| Q |
81 |
gctatagattatgaattgtacgaggattttaagaatctattcaagcaattaaatgatgagtccaaaggccac-gatacttgtaatgagtatccaagttca |
179 |
Q |
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||||||||||||||||| | | || || | | ||| ||||||||||||||| |||||||||||||||||| |||||| ||||||| |||||||||||| |
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| T |
8020314 |
gctatagattatgaattcttccagaatgtgacgaagctattcaagcaattacatgatgagtccaaaggcctttgatactagtaatgaatatccaagttca |
8020413 |
T |
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| Q |
180 |
gaaatcactgaagttcaagcatccggaaacgagtttacttcttcacaggtcaatact |
236 |
Q |
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| T |
8020414 |
gaaatcaccgaagttcaagcatccggacacgagtttacttcttcacgggtcaatact |
8020470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 18010446 - 18010617
Alignment:
| Q |
28 |
ttgaacttaaaaatgaacatttagagttaaaagtagacgttttgatttgctttgctatagattatgaattgtacgaggattttaagaatctattcaagca |
127 |
Q |
| |
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|||||||| ||||||| |||||||||||||||| ||| ||| ||||||||||| ||||||||| ||||| ||| |||||| | ||| |||||| | |
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| T |
18010446 |
ttgaacttgaaaatgacgatttagagttaaaagtggacattt-gatttgctttgatatagattacgaattctacatggatttgatgaactcattcaacga |
18010544 |
T |
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| Q |
128 |
attaaatgatgagtccaaaggccacgatacttgtaatgagtatccaagttcagaaatcactgaagttcaagca |
200 |
Q |
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||| ||||| ||||| ||||||||||||||||||| || ||||||||||| | || ||||||||||||||| |
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| T |
18010545 |
gttacatgataagtccgaaggccacgatacttgtaaggaacatccaagttcaaatattactgaagttcaagca |
18010617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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