View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_low_119 (Length: 250)

Name: NF20262_low_119
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_low_119
NF20262_low_119
[»] chr3 (2 HSPs)
chr3 (1-243)||(51810445-51810687)
chr3 (130-214)||(1663329-1663412)
[»] chr8 (1 HSPs)
chr8 (81-243)||(26794234-26794396)
[»] chr4 (3 HSPs)
chr4 (67-221)||(11494070-11494224)
chr4 (91-225)||(9881259-9881393)
chr4 (130-214)||(28964807-28964890)
[»] chr1 (2 HSPs)
chr1 (67-236)||(25590718-25590889)
chr1 (117-210)||(51119481-51119573)
[»] chr5 (1 HSPs)
chr5 (67-243)||(14234059-14234228)
[»] chr7 (1 HSPs)
chr7 (67-186)||(8265822-8265941)
[»] chr2 (2 HSPs)
chr2 (67-227)||(6962082-6962235)
chr2 (108-186)||(12635166-12635243)
[»] chr6 (1 HSPs)
chr6 (126-224)||(29010823-29010920)
[»] scaffold0019 (1 HSPs)
scaffold0019 (132-241)||(59458-59565)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 51810445 - 51810687
Alignment:
Q  1 tacattaaaataactataatcaaatgtatttgtgtatgtatttttaaaaaataatttcacaatgtgtaattcatgactgccacctaagctagttagttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51810445 tacattaaaataactataatcaaatgtatttgtgtatgtatttttaaaaaataatttcacaatgtgtaattcatgactgccacctaagctagttagttaa 51810544  T
Q  101 gaattggttacaaaactagttaatcagtgagatagcttgtgctacaagcaagtgttagttttgcctatataaaggctttgtaatgtataaattcacttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51810545 gaattggttacaaaactagttaatcagtgagatagcttgtgctacaagcaaatgttagttttgcctatataaaggctttgtaatgtataaattcacttct 51810644  T
Q  201 caatgagattcacattgcaagcataatatctttattcttctct 243  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  51810645 cattgagattcacattgcaagcataatatctttattcttctct 51810687  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 1663329 - 1663412
Alignment:
Q  130 agatagcttgtgctacaagcaagtgttagttttgcctatataaaggctttgtaatgtataaattcacttctcaatgagattcaca 214  Q
    |||||||||||||||||| |||||||||  |||||||||  |||| |||||||| || || ||||| |||| |||||||||||||    
T  1663329 agatagcttgtgctacaaacaagtgttatatttgcctat-gaaagtctttgtaaggtgtacattcaattcttaatgagattcaca 1663412  T

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Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 81 - 243
Target Start/End: Complemental strand, 26794396 - 26794234
Alignment:
Q  81 cacctaagctagttagttaagaattggttacaaaactagttaatcagtgagatagcttgtgctacaagcaagtgttagttttgcctatataaaggctttg 180  Q
    |||||||||| ||||||||||| || |||||||||||||||| | || ||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  26794396 cacctaagctggttagttaagattttgttacaaaactagttagttagggagttagcttgttctacaagcaagtgttagttttgcctatataaaggctttg 26794297  T
Q  181 taatgtataaattcacttctcaatgagattcacattgcaagcataatatctttattcttctct 243  Q
    |||||| || |||||||||| |||||||||||||||||||||||||| ||| |||||||||||    
T  26794296 taatgtgtacattcacttcttaatgagattcacattgcaagcataatctctctattcttctct 26794234  T

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Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 11494070 - 11494224
Alignment:
Q  67 taattcatgactgccacctaagctagttagttaagaattggttacaaaactagttaatcagtgagatagcttgtgctacaagcaagtgttagttttgcct 166  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |  ||||||||| ||||||||||||||||| ||||||||||||    
T  11494070 taattcataactgccagctaagctagttagttaagaatttgttacaaaactagttagtttgtgagatagtttgtgctacaagcaagtattagttttgcct 11494169  T
Q  167 atataaaggctttgtaatgtataaattcacttctcaatgagattcacattgcaag 221  Q
    ||||| |||||||||||||| || |||||||||| |||||||||| |||||||||    
T  11494170 atatataggctttgtaatgtgtacattcacttcttaatgagattcgcattgcaag 11494224  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 225
Target Start/End: Original strand, 9881259 - 9881393
Alignment:
Q  91 agttagttaagaattggttacaaaactagttaatcagtgagatagcttgtgctacaagcaagtgttagttttgcctatataaaggctttgtaatgtataa 190  Q
    |||||||| |||||| |||||||||||||||| | |  ||| |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||     
T  9881259 agttagttgagaatttgttacaaaactagttagttatggagttagcttgttctacaagaaagtgttagttttgcctatataacggctttgtaatgtgtac 9881358  T
Q  191 attcacttctcaatgagattcacattgcaagcata 225  Q
    ||||||| || |||||||||||||||| |||||||    
T  9881359 attcactacttaatgagattcacattgtaagcata 9881393  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 28964890 - 28964807
Alignment:
Q  130 agatagcttgtgctacaagcaagtgttagttttgcctatataaaggctttgtaatgtataaattcacttctcaatgagattcaca 214  Q
    ||||||||||| |||||||||||||||   ||||| |||| |||||||||||||||| |  ||||| |||| |||||||||||||    
T  28964890 agatagcttgtactacaagcaagtgttgtatttgcttata-aaaggctttgtaatgtgtgcattcaattcttaatgagattcaca 28964807  T

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Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 25590889 - 25590718
Alignment:
Q  67 taattcatgactgccacct-aagctagttagttaagaattggttacaaaa-ctagttaatcagtgagatagcttgtgctacaagcaagtgttagttttgc 164  Q
    |||||||| |||||||||| || ||||||||||||||||| |||| |||| ||||||| | |||||||||| || || ||||||||||||||||||||||    
T  25590889 taattcataactgccaccttaacctagttagttaagaatttgttaaaaaaactagttagttagtgagataggttatgttacaagcaagtgttagttttgc 25590790  T
Q  165 ctatataaaggctttgtaatgtataaattcacttctcaatgagattcacattgcaagcataatatctttatt 236  Q
     |||||||||||||||||| || || |||||||||| |||||||||||||||||||||||||| ||| ||||    
T  25590789 ttatataaaggctttgtaacgtgtacattcacttcttaatgagattcacattgcaagcataatctctctatt 25590718  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 51119481 - 51119573
Alignment:
Q  117 tagttaatcagtgagatagcttgtgctacaagcaagtgttagttttgcctatataaaggctttgtaatgtataaattcacttctcaatgagatt 210  Q
    |||||| | ||| ||||||||||||||||||| ||||||||  ||||| |||| |||||||||||||||| || ||| | |||| |||||||||    
T  51119481 tagttagttagttagatagcttgtgctacaagtaagtgttatatttgcatata-aaaggctttgtaatgtgtacatttaattcttaatgagatt 51119573  T

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Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 243
Target Start/End: Original strand, 14234059 - 14234228
Alignment:
Q  67 taattcatgactgccacctaagctagttagttaagaattggttacaaaactagttaatcagtgagatagcttgtgctacaagcaagtgttagttttgcct 166  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | || ||  |||||||| | |||||||||||||||||          
T  14234059 taattcataactgccacctaagctagttagttaagaatttgttacaaaactagttagttagggaattagcttgttcaacaagcaagtgttagtt------ 14234152  T
Q  167 atataaaggctttgtaatgtataaattcacttctcaatgagattcacattgcaagcataatatctttattcttctct 243  Q
     ||||||||||||||||||| || |||||||||| ||||||||||| |||||||||||||| ||| |||||||||||    
T  14234153 -tataaaggctttgtaatgtgtacattcacttcttaatgagattcaaattgcaagcataatgtctctattcttctct 14234228  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 186
Target Start/End: Original strand, 8265822 - 8265941
Alignment:
Q  67 taattcatgactgccacctaagctagttagttaagaattggttacaaaactagttaatcagtgagatagcttgtgctacaagcaagtgttagttttgcct 166  Q
    |||||||| |||||||||||||| |||||||| ||| || |||| ||||||||||| | ||  || |||||||| ||||||| |||||||||||||||||    
T  8265822 taattcataactgccacctaagcaagttagttgagattttgttagaaaactagttagttaggaagttagcttgttctacaagaaagtgttagttttgcct 8265921  T
Q  167 atataaaggctttgtaatgt 186  Q
    ||||||||||||||||||||    
T  8265922 atataaaggctttgtaatgt 8265941  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 6962082 - 6962235
Alignment:
Q  67 taattcatgactgccacctaagctagttagttaagaattggttacaaaactagttaatcagtgagatagcttgtgctacaagcaagtgttagttttgcct 166  Q
    |||||||| ||||||||||||| ||||||||| | | || |||||||||||||||| | ||  ||  | ||||| |||||||||||||||| ||||||||    
T  6962082 taattcataactgccacctaagttagttagttgaaattttgttacaaaactagttagttaggaagtcatcttgttctacaagcaagtgttaattttgcct 6962181  T
Q  167 atataaaggctttgtaatgtataaattcacttctcaatgagattcacattgcaagcataat 227  Q
    |||||||||||||||||||| || |   |||    ||||||||||||||||||||||||||    
T  6962182 atataaaggctttgtaatgtgtaca---act----aatgagattcacattgcaagcataat 6962235  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 12635166 - 12635243
Alignment:
Q  108 ttacaaaactagttaatcagtgagatagcttgtgctacaagcaagtgttagttttgcctatataaaggctttgtaatgt 186  Q
    |||||||||| |||| | ||||||||| ||| ||||||||||||||||||  ||| |||||| ||||||||||||||||    
T  12635166 ttacaaaacttgttagttagtgagataacttatgctacaagcaagtgttatattttcctata-aaaggctttgtaatgt 12635243  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 29010920 - 29010823
Alignment:
Q  126 agtgagatagcttgtgctacaagcaagtgttagttttgcctatataaaggctttgtaatgtataaattcacttctcaatgagattcacattgcaagcat 224  Q
    |||||||||||||||||||||||||||  | |  |||||||||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||    
T  29010920 agtgagatagcttgtgctacaagcaagcatcatatttgcctata-aaaggctttgtaatgtgtacattcacttcttaatgagattcacattgcaagcat 29010823  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 59565 - 59458
Alignment:
Q  132 atagcttgtgctacaagcaagtgttagttttgcctatataaaggctttgtaatgtataaattcacttctcaatgagattcacattgcaagcataatatct 231  Q
    ||||||||| |||||||||||||  | || |||||||| |||||||||||| |||  || ||||  ||| ||||||||||||||||||||||||||  ||    
T  59565 atagcttgttctacaagcaagtgcca-ttgtgcctata-aaaggctttgtattgtgcaacttcaagtcttaatgagattcacattgcaagcataatcact 59468  T
Q  232 ttattcttct 241  Q
     |||||||||    
T  59467 ctattcttct 59458  T

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