View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_low_12 (Length: 652)

Name: NF20262_low_12
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_low_12
NF20262_low_12
[»] chr2 (2 HSPs)
chr2 (18-640)||(3280030-3280652)
chr2 (402-508)||(17992536-17992642)
[»] chr6 (61 HSPs)
chr6 (178-634)||(28097638-28098094)
chr6 (198-643)||(28296926-28297371)
chr6 (198-643)||(28514702-28515147)
chr6 (216-643)||(28235134-28235561)
chr6 (198-625)||(28243346-28243773)
chr6 (198-643)||(28181668-28182114)
chr6 (202-643)||(28227507-28227948)
chr6 (390-603)||(29843213-29843426)
chr6 (198-520)||(28185944-28186266)
chr6 (198-643)||(28326029-28326474)
chr6 (334-643)||(28503801-28504110)
chr6 (398-604)||(26656716-26656922)
chr6 (398-604)||(26762687-26762893)
chr6 (390-608)||(29826729-29826947)
chr6 (266-406)||(28150495-28150635)
chr6 (398-497)||(26143619-26143718)
chr6 (402-524)||(26950498-26950620)
chr6 (398-490)||(25580473-25580565)
chr6 (261-609)||(28140149-28140497)
chr6 (402-524)||(26975706-26975828)
chr6 (397-499)||(27705734-27705836)
chr6 (398-497)||(25483810-25483909)
chr6 (398-497)||(25539294-25539393)
chr6 (398-604)||(26862331-26862537)
chr6 (267-509)||(26937649-26937891)
chr6 (402-498)||(25074622-25074718)
chr6 (401-524)||(26636400-26636523)
chr6 (401-524)||(26742366-26742489)
chr6 (420-499)||(26803219-26803298)
chr6 (334-497)||(26849399-26849562)
chr6 (399-497)||(26056674-26056772)
chr6 (399-497)||(26076644-26076742)
chr6 (400-497)||(25511645-25511742)
chr6 (398-499)||(27604034-27604135)
chr6 (415-488)||(27697927-27698000)
chr6 (415-499)||(26624039-26624123)
chr6 (415-499)||(26730016-26730100)
chr6 (398-530)||(26959877-26960009)
chr6 (415-499)||(27337425-27337509)
chr6 (415-499)||(27398165-27398249)
chr6 (433-608)||(26647265-26647440)
chr6 (433-608)||(26753233-26753408)
chr6 (398-497)||(27610452-27610551)
chr6 (398-497)||(27717831-27717930)
chr6 (406-475)||(26884829-26884898)
chr6 (468-643)||(26892776-26892951)
chr6 (540-608)||(27530522-27530590)
chr6 (398-497)||(26724319-26724418)
chr6 (556-643)||(26884979-26885066)
chr6 (406-608)||(31285318-31285520)
chr6 (415-476)||(27426965-27427026)
chr6 (406-499)||(28781860-28781953)
chr6 (398-489)||(27530641-27530732)
chr6 (224-499)||(28786815-28787090)
chr6 (398-492)||(26618391-26618485)
chr6 (224-328)||(28792936-28793040)
chr6 (406-497)||(27664537-27664628)
chr6 (398-499)||(28793110-28793211)
chr6 (433-497)||(26812314-26812378)
chr6 (415-499)||(27676950-27677034)
chr6 (435-499)||(27679738-27679802)
[»] scaffold0019 (1 HSPs)
scaffold0019 (210-643)||(57480-57913)
[»] scaffold0038 (3 HSPs)
scaffold0038 (216-643)||(35296-35723)
scaffold0038 (198-625)||(43508-43935)
scaffold0038 (202-643)||(28005-28446)
[»] chr5 (1 HSPs)
chr5 (391-643)||(16691611-16691863)
[»] chr4 (7 HSPs)
chr4 (249-610)||(5090169-5090533)
chr4 (224-499)||(18698726-18699001)
chr4 (397-499)||(18678886-18678988)
chr4 (415-476)||(18074529-18074590)
chr4 (397-499)||(18723411-18723513)
chr4 (433-499)||(18730830-18730896)
chr4 (445-497)||(18654805-18654857)
[»] chr1 (5 HSPs)
chr1 (397-644)||(28126860-28127107)
chr1 (267-610)||(26136508-26136851)
chr1 (397-499)||(267670-267772)
chr1 (541-644)||(28163561-28163664)
chr1 (406-497)||(28163707-28163798)
[»] scaffold0349 (1 HSPs)
scaffold0349 (398-499)||(2869-2970)
[»] chr8 (2 HSPs)
chr8 (406-499)||(29273168-29273261)
chr8 (582-643)||(16440991-16441052)
[»] scaffold0003 (1 HSPs)
scaffold0003 (415-476)||(60337-60398)
[»] scaffold0419 (2 HSPs)
scaffold0419 (406-499)||(8246-8339)
scaffold0419 (224-328)||(8064-8168)
[»] scaffold0277 (3 HSPs)
scaffold0277 (406-499)||(4042-4135)
scaffold0277 (406-499)||(13005-13098)
scaffold0277 (224-328)||(13176-13280)


Alignment Details
Target: chr2 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 18 - 640
Target Start/End: Original strand, 3280030 - 3280652
Alignment:
Q  18 cattttaatcctaggtacccacatcactcctattctgcattcattttagtttatatcctaggaaatacaaattttttattcttgaataaatattagttat 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3280030 cattttaatcctaggtacccacatcactccgattctgcattcattttagtttatatcctaggaaatacaatttttttattcttgaataaatattagttat 3280129  T
Q  118 ttgcatgtcaaaaagaatgaatttgatttgtaataataaaaagtataattatcaatacattgaatgtcttatatttacaaaaacttatatgattgggcag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3280130 ttgcatgtcaaaaagaatgaatttgatttgtaataataaaaagtataattatcaatacattgaatgtcttatatttacaaaaacttatatgattgggcag 3280229  T
Q  218 gaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3280230 gaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatg 3280329  T
Q  318 cagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggacttggaggaatgggtaagacaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3280330 cagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggacttggaggaatgggtaagacaa 3280429  T
Q  418 ctcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagca 517  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3280430 ctcttgcaagagcagtttataatttcattgctaatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagca 3280529  T
Q  518 tctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccggaaa 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3280530 tctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccggaaa 3280629  T
Q  618 aaggttctattggttcttgatga 640  Q
    |||||||||||||||||||||||    
T  3280630 aaggttctattggttcttgatga 3280652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 402 - 508
Target Start/End: Complemental strand, 17992642 - 17992536
Alignment:
Q  402 ggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaa 501  Q
    |||||||| ||||||||||||||   ||||||||||||||| |||||| |||||||| |||||   ||||| |||||||||||||||||||||||||  |    
T  17992642 ggaatgggcaagacaactcttgctcaagcagtttataatttggttgctaatcaatttcaatgtaagtgtttccttcacaatgtgagagaaaattcagtca 17992543  T
Q  502 aacatgg 508  Q
    |||||||    
T  17992542 aacatgg 17992536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 61)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 178 - 634
Target Start/End: Complemental strand, 28098094 - 28097638
Alignment:
Q  178 tgaatgtcttatatttacaaaaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaa 277  Q
    |||||||| |||||||||  |||||||| | ||||| |||||||| |||| ||| | |||||||  |||| ||||||||| |||||||||||||  | ||    
T  28098094 tgaatgtcatatatttactcaaacttatcttattggccaggaatggatatgaattcgagtttattcgggaaatagtcaaatatgtatccaacaaattgaa 28097995  T
Q  278 tcgtgctcctttacatgttgtcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaag 377  Q
    || ||  | |||||||||||| |||||||| |||||| | ||   ||||||  | |||||||| ||||||||| |||||| ||||||| || ||||||||    
T  28097994 tcatgtccttttacatgttgttgattaccccgttggcctacaacatcgagttttaaaagtaaactcacttctaaaagttggatctaatgataaagtcaag 28097895  T
Q  378 atgataggtatctatggacttggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttc 477  Q
    ||| | || ||||||||||  ||||| || ||||||||||| ||||||| ||| |||||||||||| |||||| ||||||||||||||| ||||| ||||    
T  28097894 atgcttgggatctatggaccaggagggataggtaagacaacacttgcaaaagcggtttataatttcattgctggtcaatttgaatgtgtctgtttccttc 28097795  T
Q  478 acaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtag 577  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||| ||||| |||    
T  28097794 acaatgtgagagaaaattcagcaaaacatggcttagagcatctccaaaaagatttgctttccaagattgttggattggacattaagttagcagatactag 28097695  T
Q  578 tgagggaattccaatcataaagcaaaggctacaccggaaaaaggttctattggttct 634  Q
    ||||||||||||||||||||| ||||||||||| |  || |||||||||||| ||||    
T  28097694 tgagggaattccaatcataaaacaaaggctacaacaaaagaaggttctattgattct 28097638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 198 - 643
Target Start/End: Complemental strand, 28297371 - 28296926
Alignment:
Q  198 aaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttg 297  Q
    |||||||| |||||||  ||||||| |||| ||||  ||||||| | | | ||||||||| | ||||||| |||||| ||||||| ||||||| ||||||    
T  28297371 aaacttatttgattggataggaatggatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgtgttcctttatatgttg 28297272  T
Q  298 tcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggact 397  Q
     ||||||||| |||||  | |||||| | ||||| |||||||||||| |||| ||  |   |||||||  ||||||  ||||| |||| ||||||||       
T  28297271 ccgattaccccgttggtctccagtctagggtcctaaaagtaaattcatttctggatctcagatctaatggtgaagttcagatgctagggatctatgggac 28297172  T
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||||| ||||| |||||||| ||||| |||||||||||||||| | | || |||||||||||  || | ||||||||||||||||| || |||||||||    
T  28297171 tggagggatgggaaagacaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacaatgtaagggaaaattca 28297072  T
Q  498 gcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataa 597  Q
    || ||| ||||| |||||||||| ||  |  |  | |||||||||   |||| ||||||| ||||||||||||||   |  |||||||||||||||||||    
T  28297071 gctaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacgttaagttaggagatgtcaacgagggaattccaatcataa 28296972  T
Q  598 agcaaaggctacaccggaaaaaggttctattggttcttgatgatgt 643  Q
    |||||||||| ||||| || |||||| | ||| |||| ||||||||    
T  28296971 agcaaaggcttcaccgaaagaaggttttgttgattctagatgatgt 28296926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 198 - 643
Target Start/End: Original strand, 28514702 - 28515147
Alignment:
Q  198 aaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttg 297  Q
    |||||||| |||||||  ||||||| |||| ||||  ||||||| | | | ||||||||| | ||||||| |||||| ||||||| ||||||| ||||||    
T  28514702 aaacttatttgattggataggaatggatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaatcgtgttcctttatatgttg 28514801  T
Q  298 tcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggact 397  Q
     ||||||||| |||||  | |||||| | ||||| |||||||||||| |||| ||  |   |||||||  ||||||  ||||| |||| ||||||||       
T  28514802 ccgattaccccgttggtctccagtctagggtcctaaaagtaaattcatttctggatctcagatctaatggtgaagttcagatgctagggatctatgggac 28514901  T
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||||| ||||| |||||||| ||||| |||||||||||||||| | | || |||||||||||  || | ||||||||||||||||| || |||||||||    
T  28514902 tggagggatgggaaagacaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacaatgtaagggaaaattca 28515001  T
Q  498 gcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataa 597  Q
    || ||| ||||| |||||||||| ||  |  |  | |||||||||   |||| ||||||| ||||||||||||||   |  |||||||||||||||||||    
T  28515002 gctaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacgttaagttaggagatgtcaacgagggaattccaatcataa 28515101  T
Q  598 agcaaaggctacaccggaaaaaggttctattggttcttgatgatgt 643  Q
    |||||||||| ||||| || |||||| | ||| |||| ||||||||    
T  28515102 agcaaaggcttcaccgaaagaaggttttgttgattctagatgatgt 28515147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 216 - 643
Target Start/End: Original strand, 28235134 - 28235561
Alignment:
Q  216 aggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggca 315  Q
    ||||||| |||| ||||||||| |||   | | ||||||||| ||||||| |||||||| |||| || ||||||| |||||| ||||||||| |||||      
T  28235134 aggaatggatatgaatacaagtatattaagaagatagtcaaatatgtatcaaacaagatcaatcatgttcctttatatgttgccgattaccctgttggtc 28235233  T
Q  316 tgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggacttggaggaatgggtaagac 415  Q
    |  ||||| | ||||| ||||||| ||||  | | || |||| |||||||  ||||||  ||||| |||| ||||||||   ||| ||||| || |||||    
T  28235234 tcaagtctagggtcctaaaagtaacttcatgtgtggatgttggatctaatggtgaagttcagatgctagggatctatgggactggtggaattggaaagac 28235333  T
Q  416 aactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagag 515  Q
    ||| |||||||||||||||||||||| | | ||||||||||||||  || | |||||||||||| | || || ||||||||| | ||| ||||| |||||    
T  28235334 aacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttagag 28235433  T
Q  516 catctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccgga 615  Q
    ||||| ||     |  | |||||||||   |||| ||||||| || |||||||||||   | |||||||||||||||||||||||||||||| ||||| |    
T  28235434 catctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccgaa 28235533  T
Q  616 aaaaggttctattggttcttgatgatgt 643  Q
    | |||||||| ||| |||| ||||||||    
T  28235534 agaaggttctgttgattctagatgatgt 28235561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 198 - 625
Target Start/End: Original strand, 28243346 - 28243773
Alignment:
Q  198 aaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttg 297  Q
    |||||||| |||||||| ||||||| |||| ||||| ||||||| | | | ||||| ||| || |||||| ||| || ||||||| |||| || ||||||    
T  28243346 aaacttatttgattgggtaggaatggatatgaatacgagtttattgagaagatagtaaaatatttatccagcaaaatcaatcgtgttcctctatatgttg 28243445  T
Q  298 tcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggact 397  Q
      |||||||| |||||  |  ||||| | ||||| |||||||||  | |||| || || | ||||| |  || |||  | ||| |||| ||||||||       
T  28243446 ctgattaccctgttggtctcgagtctagggtcctaaaagtaaataaatttcttgatgtcggatctactggtgtagttcatatgctagggatctatgggac 28243545  T
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||| |||||||| |||||||| |||||||||||||||||||||| | | |||||||||||||| ||| |||||||||||||| |||| || |||||||||    
T  28243546 tggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaattca 28243645  T
Q  498 gcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataa 597  Q
     | ||| ||||| |||||||||| ||  |  |  | |||||||||   |||| |||||||||| |||| |||||||  |  |||||||||||||| ||||    
T  28243646 actaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacattgagttgggagatatcaacgagggaattccaataataa 28243745  T
Q  598 agcaaaggctacaccggaaaaaggttct 625  Q
    || ||||||| ||||| || ||||||||    
T  28243746 agaaaaggcttcaccgaaacaaggttct 28243773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 198 - 643
Target Start/End: Original strand, 28181668 - 28182114
Alignment:
Q  198 aaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttg 297  Q
    |||||||| |||||||| ||||||| |||| ||||  ||||||| |   | ||||||||| | || ||||| ||||| ||| ||| ||||||| ||||||    
T  28181668 aaacttatttgattgggtaggaatggatatgaatatgagtttatcgaaaagatagtcaaatacgtttccaaaaagatcaattgtgttcctttatatgttg 28181767  T
Q  298 tcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggact 397  Q
     |||||||   |||||  |  ||||| | ||||| |||||||||||| |||| || || | |||||||  ||||||  ||||| |||| ||||||||       
T  28181768 ccgattactatgttggtctcgagtctagggtcctaaaagtaaattcatttctggatgtcggatctaatggtgaagttcagatgctagggatctatgggac 28181867  T
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||||||||||| ||||| || |||||||||||||||||||||| | | ||||||||||||||  || | ||||||||| || |  | || | |||||||    
T  28181868 tggaggaatgggaaagacgacgcttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttaacgacataagggcaaattca 28181967  T
Q  498 gcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcat-a 596  Q
    || ||| ||||| |||||||||| ||  |  || | |||||||||   | || ||||||| ||||||||||||||   |  ||||||| ||||||||| |    
T  28181968 gctaaatatggtttagagcatctacaggaaaatctcctttccaaattagctgaattggacgttaagttaggagatgtcaacgagggaactccaatcataa 28182067  T
Q  597 aagcaaaggctacaccggaaaaaggttctattggttcttgatgatgt 643  Q
    ||||||||||| ||||| || |||||||||||| |||| ||||||||    
T  28182068 aagcaaaggcttcaccgaaagaaggttctattgattctagatgatgt 28182114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 202 - 643
Target Start/End: Original strand, 28227507 - 28227948
Alignment:
Q  202 ttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcga 301  Q
    |||| |||||||| |||||||  ||| ||| | ||||||| | | | ||||||||| || |||| |||||||| |||| || |||||||||||||| |||    
T  28227507 ttatttgattgggtaggaatggctatgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcatgttcctttacatgttgccga 28227606  T
Q  302 ttacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggacttgga 401  Q
    |||||| |||||  |  | ||| | ||||| ||||||||||||||| | || |||| |||||||  |||||   |||||||||| ||||| ||   | |     
T  28227607 ttaccctgttggtgttgaatctagggtcctaaaagtaaattcacttatggatgttggatctaatggtgaagcacagatgatagggatctacgggaatcgt 28227706  T
Q  402 ggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaa 501  Q
    |||||||| |||||||| |||||||| ||||||||||||||  | || |||||||||||  || | |||||||||||| |||| || ||||||||||| |    
T  28227707 ggaatgggaaagacaacacttgcaagggcagtttataattttatagccgatcaatttgatggtttgtgttttcttcacgatgtaagggaaaattcagcta 28227806  T
Q  502 aacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagca 601  Q
    || ||||| ||||||||||  |     |  | |||||||||   |||| ||||||  ||||||||||||||   |  |||||||||||| || |||||||    
T  28227807 aatatggtttagagcatctataggtaaagatcctttccaaattagttgaattggaagttaagttaggagatgtcaacgagggaattccagtcttaaagca 28227906  T
Q  602 aaggctacaccggaaaaaggttctattggttcttgatgatgt 643  Q
    |||||| ||||| || || ||||||||| |||| ||||||||    
T  28227907 aaggcttcaccgaaagaaagttctattgattctcgatgatgt 28227948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 390 - 603
Target Start/End: Complemental strand, 29843426 - 29843213
Alignment:
Q  390 tatggacttggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagag 489  Q
    |||||| |||| ||| ||||||| ||||| |||||  ||||| ||||||||||  |||||||| ||||||||||| | |||||||||||| | | |||||    
T  29843426 tatggaattggtggattgggtaaaacaacacttgctcgagcaatttataatttgattgctgataaatttgaatgtttgtgttttcttcacgacgggagag 29843327  T
Q  490 aaaattcagcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattcc 589  Q
    ||| |||||| ||||||||  |||||||||||||| || |  ||||||||||||| ||||  |||||||||||| ||||||||  || ||| ||||||||    
T  29843326 aaagttcagctaaacatggcttagagcatctccaagagaagcttctttccaaaacagttgatttggacattaagctaggagatgttaatgaaggaattcc 29843227  T
Q  590 aatcataaagcaaa 603  Q
    ||| ||||||||||    
T  29843226 aataataaagcaaa 29843213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 198 - 520
Target Start/End: Original strand, 28185944 - 28186266
Alignment:
Q  198 aaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttg 297  Q
    |||||||| | |||||| |||||||  ||| || || ||||||| | | | ||||||||| ||||||| |||||||| |||| || ||||||| ||||||    
T  28185944 aaacttattttattgggtaggaatggctatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttg 28186043  T
Q  298 tcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggact 397  Q
      |||| ||| ||||| ||  ||||| | || || ||||||||||||||| | ||  ||| |||||||  ||||||  ||||| |||| |||||||| |     
T  28186044 ctgatttccctgttggtatcgagtctagggttctaaaagtaaattcacttatggattttggatctaatggtgaagttcagatgctagggatctatgggcc 28186143  T
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||||||||||| ||||| || |||||||||||||||||||||| | | ||||||||||||||   | | |||||||||||| |||| || | |||||||    
T  28186144 tggaggaatgggaaagacgacacttgcaagagcagtttataattccctagctgatcaatttgatgatttgtgttttcttcacgatgtaaggggaaattca 28186243  T
Q  498 gcaaaacatggtctagagcatct 520  Q
    || ||| ||||| | ||||||||    
T  28186244 gctaaatatggtttggagcatct 28186266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 198 - 643
Target Start/End: Original strand, 28326029 - 28326474
Alignment:
Q  198 aaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttg 297  Q
    |||||||| |||||||| |||||||  ||| ||||| ||||||| | | | ||||||||| | |||| ||  ||||| | | ||| ||||||| ||||||    
T  28326029 aaacttatttgattgggtaggaatggctatgaatacgagtttattgagaagatagtcaaatacgtattcaggaagatcagttgtgttcctttatatgttg 28326128  T
Q  298 tcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggact 397  Q
      |||||||| || ||  |  ||||| |  ||||  |||||||||||||| |||| |||| |||||||  | ||||  ||||| |||| ||||||||       
T  28326129 cggattaccctgtaggtctcgagtctaggatcctagaagtaaattcacttatagatgttggatctaatggtaaagttcagatgctagggatctatgggac 28326228  T
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||| |||||||| |||||||| |||||||||||||||||||||| | | || |||||||||||  || | ||||||||| || |  | || | |||||||    
T  28326229 tggtggaatgggaaagacaacacttgcaagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttaacgaaataagtgcaaattca 28326328  T
Q  498 gcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataa 597  Q
    || ||| ||||| |||||||||| ||  |  |  | |||||||||   |||| |||| || ||||||||||||||   | ||| ||| ||||||||||||    
T  28326329 gctaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattgtacgttaagttaggagatgtcaatgatggagttccaatcataa 28326428  T
Q  598 agcaaaggctacaccggaaaaaggttctattggttcttgatgatgt 643  Q
    |||||||||| ||||| || |||||||| ||| |||| ||||||||    
T  28326429 agcaaaggcttcaccgaaagaaggttctgttgattctcgatgatgt 28326474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 334 - 643
Target Start/End: Original strand, 28503801 - 28504110
Alignment:
Q  334 aagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggacttggaggaatgggtaagacaactcttgcaagagcagt 433  Q
    |||||||||||||| |||| |||| |||||||  | ||||  ||||| |||| ||||||||   ||| |||||||| |||||||| ||||||||||||||    
T  28503801 aagtaaattcacttatagatgttggatctaatggtaaagttcagatgctagggatctatgggactggtggaatgggaaagacaacacttgcaagagcagt 28503900  T
Q  434 ttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaaggatttt 533  Q
    |||||||| | | || |||||||||||  || | ||||||||| || |  | || | ||||||||| ||| ||||| |||||||||| ||  |  |  |     
T  28503901 ttataattccatagccgatcaatttgatggtttgtgttttcttaacgaaataagtgcaaattcagctaaatatggtttagagcatctacaggaaaagctc 28504000  T
Q  534 ctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccggaaaaaggttctattggttc 633  Q
    |||||||||   |||| |||| || ||||||||||||||   | ||| ||| |||||||||||||||||||||| ||||| || |||||||| ||| |||    
T  28504001 ctttccaaattagttgaattgtacgttaagttaggagatgtcaatgatggagttccaatcataaagcaaaggcttcaccgaaagaaggttctgttgattc 28504100  T
Q  634 ttgatgatgt 643  Q
    | ||||||||    
T  28504101 tcgatgatgt 28504110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 398 - 604
Target Start/End: Original strand, 26656716 - 26656922
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||||| ||||||||  |||| ||||| | |||| |||||||||| || ||||||||||||||| |||||||||||||||||||||| ||||| ||||||    
T  26656716 tggaggcatgggtaaatcaacacttgccaaagcaatttataattttgtcgctgatcaatttgaaggtgtatgttttcttcacaatgtcagagagaattca 26656815  T
Q  498 gcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataa 597  Q
    ||  |  ||  | |  | ||||||||  ||||  | ||||| ||||||||| || || | |||||||||||||||  |||||||||||||||||||||||    
T  26656816 gctcataataatttgaaacatctccaggaggagctcctttcaaaaactgttagagtgaatattaagttaggagatgttagtgagggaattccaatcataa 26656915  T
Q  598 agcaaag 604  Q
    || ||||    
T  26656916 aggaaag 26656922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 398 - 604
Target Start/End: Original strand, 26762687 - 26762893
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||||| ||||||||  |||| ||||| | |||| |||||||||| || ||||||||||||||| |||||||||||||||||||||| ||||| ||||||    
T  26762687 tggaggcatgggtaaatcaacacttgccaaagcaatttataattttgtcgctgatcaatttgaaggtgtatgttttcttcacaatgtcagagagaattca 26762786  T
Q  498 gcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataa 597  Q
    ||  |  ||  | |  | ||||||||  ||||  | ||||| ||||||||| || || | |||||||||||||||  |||||||||||||||||||||||    
T  26762787 gctcataataatttgaaacatctccaggaggagctcctttcaaaaactgttagagtgaatattaagttaggagatgttagtgagggaattccaatcataa 26762886  T
Q  598 agcaaag 604  Q
    || ||||    
T  26762887 aggaaag 26762893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 390 - 608
Target Start/End: Original strand, 29826729 - 29826947
Alignment:
Q  390 tatggacttggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagag 489  Q
    |||||| |||| ||| ||||||| ||||| |||||  ||||| |||||||| |  ||| |||| ||||||||||  | |||||||||||  |  ||||||    
T  29826729 tatggaattggcggattgggtaaaacaacacttgctcgagcaatttataatatgattggtgataaatttgaatgcttgtgttttcttcatgacttgagag 29826828  T
Q  490 aaaattcagcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattcc 589  Q
    ||| |||||| ||||||||  |||| ||||||||| || |  ||||||||||||| |||| |||||||| |||| ||||||||  ||  || ||||||||    
T  29826829 aaagttcagctaaacatggcttagaacatctccaacagaagcttctttccaaaacagttgaattggacactaagctaggagatgttaacgaaggaattcc 29826928  T
Q  590 aatcataaagcaaaggcta 608  Q
    ||| |||||||||||||||    
T  29826929 aataataaagcaaaggcta 29826947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 266 - 406
Target Start/End: Original strand, 28150495 - 28150635
Alignment:
Q  266 caacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaat 365  Q
    ||||||||| | |||||  |||||||||||||| |||||||| |||||| |||||| ||||||||  | |||||||||||||||||  |||| || ||||    
T  28150495 caacaagattagtcgtgtccctttacatgttgttgattaccctgttggcctgcagtgtcgagtcccaatagtaaattcacttctagctgttggatttaat 28150594  T
Q  366 tatgaagtcaagatgataggtatctatggacttggaggaat 406  Q
     |  |||||||||||||||| |||||||||| |||||||||    
T  28150595 gacaaagtcaagatgatagggatctatggacctggaggaat 28150635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 398 - 497
Target Start/End: Original strand, 26143619 - 26143718
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||||| ||||||||  |||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||    
T  26143619 tggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattca 26143718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 402 - 524
Target Start/End: Original strand, 26950498 - 26950620
Alignment:
Q  402 ggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaa 501  Q
    |||||||| |||||||| |||||   |||||||||||| ||  ||||| |||||||||||||   |||||||||||||||||||||||||||||||| ||    
T  26950498 ggaatgggaaagacaacacttgctcaagcagtttataacttgattgctaatcaatttgaatgcaaatgttttcttcacaatgtgagagaaaattcagtaa 26950597  T
Q  502 aacatggtctagagcatctccaa 524  Q
    |||||||  ||||| ||||||||    
T  26950598 aacatggcttagagtatctccaa 26950620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 398 - 490
Target Start/End: Original strand, 25580473 - 25580565
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagaga 490  Q
    |||||| ||||||||  |||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||||    
T  25580473 tggaggcatgggtaaatcaacacttgcaaaagcagtttataattttgttgctgatcaatttgaaggtgtatgttttcttcataatgtcagaga 25580565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 261 - 609
Target Start/End: Original strand, 28140149 - 28140497
Alignment:
Q  261 gtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcat 360  Q
    ||||| ||||||||||||||| |||||||||||||||  |||||||||||||| ||  |||||||| | ||  || |||| |||||||| || ||||  |    
T  28140149 gtatcgaacaagataaatcgtactcctttacatgttgcggattacccggttggaatagagtctcgattgctacaaataaaatcacttctggatgttggtt 28140248  T
Q  361 ctaattatgaagtcaagatgataggtatctatggacttggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttga 460  Q
    | ||| |||  |||    || | || || |||||  | |||||   |||||| ||||| ||||||  |||| ||||||||||  |||| |||||||||||    
T  28140249 ccaatgatgcggtctgcttggtcgggatttatgggatgggagggtcgggtaaaacaacacttgcacaagcaatttataattttattgccgatcaatttga 28140348  T
Q  461 atgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacatt 560  Q
    |||| | ||||||||||| ||||||||||||| |||||| ||||||||  ||||  |||||||| |  |  | ||||| ||||| ||||| |||  | ||    
T  28140349 atgtttgtgttttcttcataatgtgagagaaatttcagctaaacatggcttagaagatctccaagaaaaactcctttctaaaacagttggtttgagcgtt 28140448  T
Q  561 aagttaggagatagtagtgagggaattccaatcataaagcaaaggctac 609  Q
    ||||| ||| ||   ||||| ||||| ||||| |||||| |||||||||    
T  28140449 aagtttggacatgtaagtgaaggaataccaataataaaggaaaggctac 28140497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 402 - 524
Target Start/End: Original strand, 26975706 - 26975828
Alignment:
Q  402 ggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaa 501  Q
    ||||||||||||||||| |||||   |||||||||||||||  ||||| ||||||||||||||   ||||| |||||| ||||||||||||||||||  |    
T  26975706 ggaatgggtaagacaacacttgctcaagcagtttataatttgattgctaatcaatttgaatgtaactgtttccttcacgatgtgagagaaaattcagtta 26975805  T
Q  502 aacatggtctagagcatctccaa 524  Q
    |||||||  ||||| ||||||||    
T  26975806 aacatggcttagagtatctccaa 26975828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 397 - 499
Target Start/End: Complemental strand, 27705836 - 27705734
Alignment:
Q  397 ttggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattc 496  Q
    |||||||  |||||||  |||| |||||||||||| |||||||||| |||||||||||||||||| || |||||||||||||  |||||||||| |||||    
T  27705836 ttggaggcttgggtaaatcaacacttgcaagagcaatttataattttgttgctgatcaatttgaaggtttatgttttcttcatgatgtgagagagaattc 27705737  T
Q  497 agc 499  Q
    |||    
T  27705736 agc 27705734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 398 - 497
Target Start/End: Original strand, 25483810 - 25483909
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||||| ||||||||  |||| ||||||| |||||||| ||||||  ||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||    
T  25483810 tggaggcatgggtaaatcaacacttgcaaaagcagtttttaattttcttgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattca 25483909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 398 - 497
Target Start/End: Original strand, 25539294 - 25539393
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||||| ||||||||  |||| ||||||| |||||||| |||||| ||||||||||||||||||  ||||||||||||||| ||||| ||||| ||||||    
T  25539294 tggaggcatgggtaaatcaacacttgcaaaagcagtttttaattttgttgctgatcaatttgaagttgtatgttttcttcataatgtcagagagaattca 25539393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 398 - 604
Target Start/End: Original strand, 26862331 - 26862537
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||||| ||||| ||  |||| ||||||| |||| |||||||||| ||||| |||||||||||| |||||||||||||||| || || ||||| ||||||    
T  26862331 tggaggcatggggaaatcaacacttgcaaaagcaatttataattttgttgccgatcaatttgaaggtgtatgttttcttcataaagttagagagaattca 26862430  T
Q  498 gcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataa 597  Q
     |  |  || |  |  | |||||||| |||||  ||||||  ||||| |||  |||| |||||||||||||||||  |||||||||||||||| | ||||    
T  26862431 actcataatagcttgaaacatctccagaaggagcttcttttaaaaacagttaaattgaacattaagttaggagatgctagtgagggaattccacttataa 26862530  T
Q  598 agcaaag 604  Q
    || ||||    
T  26862531 aggaaag 26862537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 267 - 509
Target Start/End: Original strand, 26937649 - 26937891
Alignment:
Q  267 aacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaatt 366  Q
    |||||||| |||||| |||||||||||||||  |||||||| |||||  ||||||||||| | ||  |||||||||| |||||  |  ||| || | ||     
T  26937649 aacaagatcaatcgtcctcctttacatgttgcggattaccccgttggactgcagtctcgattgctacaagtaaattctcttctgaatattggatatgatg 26937748  T
Q  367 atgaagtcaagatgataggtatctatggacttggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgt 466  Q
    ||| |||    ||| |||| ||||||||  |||| ||||| |||||  |||| |||||| ||||| ||||||||||  ||| ||||||||||||| || |    
T  26937749 atggagtatgtatggtagggatctatgggattggcggaattggtaaatcaacacttgcacgagcaatttataatttgattggtgatcaatttgaaagttt 26937848  T
Q  467 atgttttcttcacaatgtgagagaaaattcagcaaaacatggt 509  Q
     ||||||||||| |||||  |||||||| || | |||||||||    
T  26937849 gtgttttcttcataatgtacgagaaaatgcaactaaacatggt 26937891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 402 - 498
Target Start/End: Original strand, 25074622 - 25074718
Alignment:
Q  402 ggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcag 498  Q
    |||||||| ||||||||||||||   |||| ||||||||||  ||||| ||||||||||||||   ||||| |||||||||||||||||||||||||    
T  25074622 ggaatgggcaagacaactcttgctcaagcaatttataatttgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcag 25074718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 401 - 524
Target Start/End: Original strand, 26636400 - 26636523
Alignment:
Q  401 aggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagca 500  Q
    ||||||||| |||||||  |||||   |||| ||||||||||  || || |||||||||||||| | ||||| |||||||||||||||||||||||||      
T  26636400 aggaatgggcaagacaaaacttgctcaagcaatttataatttgatttctaatcaatttgaatgtttgtgtttccttcacaatgtgagagaaaattcagtt 26636499  T
Q  501 aaacatggtctagagcatctccaa 524  Q
    ||||||||  ||||| ||||||||    
T  26636500 aaacatggcttagagtatctccaa 26636523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 401 - 524
Target Start/End: Original strand, 26742366 - 26742489
Alignment:
Q  401 aggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagca 500  Q
    ||||||||| |||||||  |||||   |||| ||||||||||  || || |||||||||||||| | ||||| |||||||||||||||||||||||||      
T  26742366 aggaatgggcaagacaaaacttgctcaagcaatttataatttgatttctaatcaatttgaatgtttgtgtttccttcacaatgtgagagaaaattcagtt 26742465  T
Q  501 aaacatggtctagagcatctccaa 524  Q
    ||||||||  ||||| ||||||||    
T  26742466 aaacatggcttagagtatctccaa 26742489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 420 - 499
Target Start/End: Original strand, 26803219 - 26803298
Alignment:
Q  420 cttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    |||||||||||| | |||||||| |||||||||||||||||| || |||||||||||||  |||||||||| ||||||||    
T  26803219 cttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttcttcatgatgtgagagagaattcagc 26803298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 334 - 497
Target Start/End: Original strand, 26849399 - 26849562
Alignment:
Q  334 aagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggacttggaggaatgggtaagacaactcttgcaagagcagt 433  Q
    |||| ||||||||||||||| | | ||||||| ||| ||||  ||  ||||| |||  ||||  |||||||||||| || ||||| |||||   ||||||    
T  26849399 aagtgaattcacttctagaattggaatctaatgatggagtctggaaaataggaatccttggaactggaggaatgggaaaaacaacacttgctcaagcagt 26849498  T
Q  434 ttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||||||||   ||||||||||||||||||||   ||||| |||||| |||||||||||||||||    
T  26849499 ttataattcgattgctgatcaatttgaatgtaagtgtttccttcacgatgtgagagaaaattca 26849562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 399 - 497
Target Start/End: Original strand, 26056674 - 26056772
Alignment:
Q  399 ggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||||| ||||||||  |||| ||||||| |||||||| |||||   ||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||    
T  26056674 ggaggcatgggtaaatcaacacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattca 26056772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 399 - 497
Target Start/End: Original strand, 26076644 - 26076742
Alignment:
Q  399 ggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||||| ||||||||  |||| ||||||| |||||||| |||||   ||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||    
T  26076644 ggaggcatgggtaaatcaacacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattca 26076742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 400 - 497
Target Start/End: Original strand, 25511645 - 25511742
Alignment:
Q  400 gaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||| ||||||||  |||| ||||||| |||||||| |||||   ||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||    
T  25511645 gaggcatgggtaaatcaacacttgcaaaagcagtttttaattctattgctgatcaatttgaaagtgtatgttttcttcataatgtcagagagaattca 25511742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 398 - 499
Target Start/End: Complemental strand, 27604135 - 27604034
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||||||| |||||||  |||| ||||||| |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||    
T  27604135 tggaggattgggtaaatcaacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattca 27604036  T
Q  498 gc 499  Q
    ||    
T  27604035 gc 27604034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 27698000 - 27697927
Alignment:
Q  415 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgaga 488  Q
    |||| |||||||||||| | |||||||| |||||||||||||||||| || ||||||||||||| |||||||||    
T  27698000 caacacttgcaagagcaatctataatttggttgctgatcaatttgaaggtttatgttttcttcataatgtgaga 27697927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 415 - 499
Target Start/End: Original strand, 26624039 - 26624123
Alignment:
Q  415 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    |||| |||||||||||| | ||||| || |||||||||||||||||| || |||||||||||||  |||||||||| ||||||||    
T  26624039 caacacttgcaagagcaatctataactttgttgctgatcaatttgaaggtttatgttttcttcatgatgtgagagagaattcagc 26624123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 415 - 499
Target Start/End: Original strand, 26730016 - 26730100
Alignment:
Q  415 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    |||| |||||||||||| | ||||| || |||||||||||||||||| || |||||||||||||  |||||||||| ||||||||    
T  26730016 caacacttgcaagagcaatctataactttgttgctgatcaatttgaaggtttatgttttcttcatgatgtgagagagaattcagc 26730100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 398 - 530
Target Start/End: Original strand, 26959877 - 26960009
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||||||||||| |||||||| ||| |   ||||||||||||||   ||| | |||||||||||| |   ||||| ||||||||||||||||||||||||    
T  26959877 tggaggaatgggaaagacaacactttctcaagcagtttataattcgattgttcatcaatttgaatttaagtgtttccttcacaatgtgagagaaaattca 26959976  T
Q  498 gcaaaacatggtctagagcatctccaaaaggat 530  Q
    |  ||||||||  ||||| |||||||| |||||    
T  26959977 gttaaacatggcttagagtatctccaagaggat 26960009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 415 - 499
Target Start/End: Complemental strand, 27337509 - 27337425
Alignment:
Q  415 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    |||| ||||||| |||| ||||||||||| ||||||||||||||||| | ||||| |||||||| ||||| ||||| ||||||||    
T  27337509 caacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggagtatgctttcttcataatgttagagagaattcagc 27337425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 415 - 499
Target Start/End: Complemental strand, 27398249 - 27398165
Alignment:
Q  415 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    |||| ||||||| |||| ||||||||||| ||||||||||||||||| | ||||| |||||||| ||||| ||||| ||||||||    
T  27398249 caacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggagtatgctttcttcataatgttagagagaattcagc 27398165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 433 - 608
Target Start/End: Original strand, 26647265 - 26647440
Alignment:
Q  433 tttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaaggattt 532  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||  |  ||    |  | |||||||| |||||  |    
T  26647265 tttataattttgttgctgatcaatttgaaggtgtatgctttcttcataatgtcagagagaattcagctcataataacttgaaacatctccagaaggagct 26647364  T
Q  533 tctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggcta 608  Q
     ||||| ||||| |||  | || |||||||||| ||| ||| | ||||||||||||||||||| ||| ||||||||    
T  26647365 cctttcaaaaacagttaaagtgaacattaagtttggacatatttgtgagggaattccaatcattaaggaaaggcta 26647440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 433 - 608
Target Start/End: Original strand, 26753233 - 26753408
Alignment:
Q  433 tttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaaggattt 532  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||  |  ||    |  | |||||||| |||||  |    
T  26753233 tttataattttgttgctgatcaatttgaaggtgtatgctttcttcataatgtcagagagaattcagctcataataacttgaaacatctccagaaggagct 26753332  T
Q  533 tctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggcta 608  Q
     ||||| ||||| |||  | || |||||||||| ||| ||| | ||||||||||||||||||| ||| ||||||||    
T  26753333 cctttcaaaaacagttaaagtgaacattaagtttggacatatttgtgagggaattccaatcattaaggaaaggcta 26753408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 398 - 497
Target Start/End: Complemental strand, 27610551 - 27610452
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||||||| |||||||  |||| ||||||| |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||    
T  27610551 tggaggattgggtaaatcaacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattca 27610452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 398 - 497
Target Start/End: Complemental strand, 27717930 - 27717831
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||||||| |||||||  |||| ||||||| |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||    
T  27717930 tggaggattgggtaaatcaacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattca 27717831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 406 - 475
Target Start/End: Original strand, 26884829 - 26884898
Alignment:
Q  406 tgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttct 475  Q
    |||||||  |||| ||||||| |||| |||||||||  ||||||||||||||||||||||||||||||||    
T  26884829 tgggtaaatcaacacttgcaaaagcaatttataattatgttgctgatcaatttgaatgtgtatgttttct 26884898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 468 - 643
Target Start/End: Complemental strand, 26892951 - 26892776
Alignment:
Q  468 tgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttag 567  Q
    |||||||||||||| |||||||||||||| ||||| |||||| ||||  | |||||| || |  | || || |||||  |||||||| | |||| |||||    
T  26892951 tgttttcttcacaacgtgagagaaaattccgcaaagcatggtttagaaaacctccaagagaagctcctctcaaaaacaattggattgaatattaggttag 26892852  T
Q  568 gagatagtag-tgagggaattccaatcataaagcaaaggctacaccggaaaaaggttctattggttcttgatgatgt 643  Q
    ||||| || | ||| |||||| ||||||||||  | |||||||| || |||| ||||||||||||| | ||||||||    
T  26892851 gagat-gtggatgaaggaatttcaatcataaaaaagaggctacatcgaaaaagggttctattggttttagatgatgt 26892776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 540 - 608
Target Start/End: Complemental strand, 27530590 - 27530522
Alignment:
Q  540 aaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggcta 608  Q
    ||||| ||| ||||||||||||||||||||| |  |||| |||||||||||||||| ||||||||||||    
T  27530590 aaaacagttagattggacattaagttaggaggtgttagtcagggaattccaatcattaagcaaaggcta 27530522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 497
Target Start/End: Original strand, 26724319 - 26724418
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||||||| ||||||| || || ||| |  ||||||||||| ||||  ||||||||||||||||| |  | ||||| ||||||||||||||||||||||||    
T  26724319 tggaggattgggtaaaacgacacttactcgagcagtttatgatttgattgctgatcaatttgaagggttgtgtttccttcacaatgtgagagaaaattca 26724418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 26884979 - 26885066
Alignment:
Q  556 acattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccggaaaaaggttctattggttcttgatgatgt 643  Q
    |||||||||||||||||  |||||||||||||||| |||||||| |||| |||||  | || ||| |||| ||| |||||||||||||    
T  26884979 acattaagttaggagatgttagtgagggaattccactcataaaggaaagactacatagaaagaagattcttttgattcttgatgatgt 26885066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 406 - 608
Target Start/End: Original strand, 31285318 - 31285520
Alignment:
Q  406 tgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaaca 505  Q
    |||||||  |||| |||||||||||| | ||||||||  ||| ||||||||||||  |  |||||||||||||  |||||||||| |||||||| ||| |    
T  31285318 tgggtaaatcaacacttgcaagagcaatctataattttattggtgatcaatttgacggattatgttttcttcatgatgtgagagagaattcagctaaaaa 31285417  T
Q  506 tggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaagg 605  Q
    |    |  | ||||||||| || |  | ||||  |||||  |||||||||| ||||||||||   ||  ||||||||||||||||||||| ||| |||||    
T  31285418 taacttgaaacatctccaagagaagctccttttgaaaacaattggattggaaattaagttagaccatgttagtgagggaattccaatcattaaggaaagg 31285517  T
Q  606 cta 608  Q
    |||    
T  31285518 cta 31285520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 415 - 476
Target Start/End: Complemental strand, 27427026 - 27426965
Alignment:
Q  415 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttctt 476  Q
    |||| |||||||||||| | |||||||| |||||||||||||||||| || |||||||||||    
T  27427026 caacacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttctt 27426965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 499
Target Start/End: Original strand, 28781860 - 28781953
Alignment:
Q  406 tgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    |||||||  |||| |||| || |||||||||||| ||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  28781860 tgggtaaatcaacacttgtaaaagcagtttataacttaattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 28781953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 489
Target Start/End: Complemental strand, 27530732 - 27530641
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagag 489  Q
    |||||| || |||||  |||| ||||||| |||| ||||||||||| |||||||||||||||||  | ||||||||||  | ||||||||||    
T  27530732 tggaggcataggtaaatcaacacttgcaaaagcaatttataatttcattgctgatcaatttgaagttttatgttttctagaaaatgtgagag 27530641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 224 - 499
Target Start/End: Original strand, 28786815 - 28787090
Alignment:
Q  224 atatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtct 323  Q
    |||| ||||||||||||| || |||||||||||| |  | ||||||||||| | ||||   || |||||||||| | ||||||| |||||  ||||||||    
T  28786815 atatgaatacaagtttattggagatatagtcaaatacatctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttggattgcagtct 28786914  T
Q  324 cgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggacttggaggaatgggtaagacaactcttg 423  Q
    ||||| |   |||| || || ||||| || |  | |||| || ||| ||||   ||| ||||  | |||||   ||||||  |||||||  |||| ||||    
T  28786915 cgagtacaacaagtgaaatcgcttcttgatgaaggatctgatgatggagtccgcatggtaggactttatggtactggaggcttgggtaaatcaacacttg 28787014  T
Q  424 caagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
     || |||| ||||||||||  || ||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  28787015 gaaaagcaatttataattttatttctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 28787090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 492
Target Start/End: Original strand, 26618391 - 26618485
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaa 492  Q
    ||||||| ||||||| || || ||| |  ||||||||||| ||||  ||||||||||||||||| |  | ||||| |||||||||||||||||||    
T  26618391 tggaggattgggtaaaacgacacttactcgagcagtttatgatttgattgctgatcaatttgaagggttgtgtttccttcacaatgtgagagaaa 26618485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 328
Target Start/End: Original strand, 28792936 - 28793040
Alignment:
Q  224 atatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtct 323  Q
    |||| ||||||||||||| || |||||||||||| |  | ||||||||||| | ||||   || |||||||||| | ||||||| |||||  ||||||||    
T  28792936 atatgaatacaagtttattggagatatagtcaaatacatctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttggattgcagtct 28793035  T
Q  324 cgagt 328  Q
    |||||    
T  28793036 cgagt 28793040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 497
Target Start/End: Complemental strand, 27664628 - 27664537
Alignment:
Q  406 tgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||||||||||||| |||||   ||||||||||||||   ||| | ||||||||||||||   ||||| ||| ||||||| ||||||||||||    
T  27664628 tgggtaagacaacacttgctgaagcagtttataattcaattgttaatcaatttgaatgtaggtgtttcctttacaatgttagagaaaattca 27664537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 499
Target Start/End: Original strand, 28793110 - 28793211
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||||||  |||||||  |||| |||| || |||| ||||||||||  || ||||||||||||||||   |||||||||| | ||||||||||| | ||||    
T  28793110 tggaggcttgggtaaatcaacacttggaaaagcaatttataattttatttctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagagttca 28793209  T
Q  498 gc 499  Q
    ||    
T  28793210 gc 28793211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 26812314 - 26812378
Alignment:
Q  433 tttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||||||||||  ||||||||||||||||  || | ||||| ||||||| |||| |||||||||||    
T  26812314 tttataatttgattgctgatcaatttgatggtttgtgtttccttcacagtgtgcgagaaaattca 26812378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 499
Target Start/End: Complemental strand, 27677034 - 27676950
Alignment:
Q  415 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    |||| ||||| | |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||| ||| | ||||||    
T  27677034 caacacttgcgaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgaaagagagttcagc 27676950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 499
Target Start/End: Original strand, 27679738 - 27679802
Alignment:
Q  435 tataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    |||||||| ||||| |||||||| ||| ||  ||||||||||||  |||||||||| ||||||||    
T  27679738 tataattttgttgcagatcaattcgaaggttcatgttttcttcatgatgtgagagagaattcagc 27679802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 210 - 643
Target Start/End: Complemental strand, 57913 - 57480
Alignment:
Q  210 ttgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccgg 309  Q
    ||||| ||||||| |||| ||| | ||||||| | | | ||||||||| ||||||| |||||||| |||| || ||||||| |||||| ||||||||| |    
T  57913 ttgggtaggaatggatatgaatgcgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgccgattaccctg 57814  T
Q  310 ttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggacttggaggaatggg 409  Q
    |||| ||  | ||| | ||||| ||||||||||||||||| || |||  |||||||  ||||||  ||||| |||| ||||| ||| |||||||||||||    
T  57813 ttggtatcgaatctagggtcctaaaagtaaattcacttctggatgttagatctaatggtgaagttcagatgctagggatctacggaattggaggaatggg 57714  T
Q  410 taagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggt 509  Q
     |||||||| ||||| |||||||||| ||||| | | || |||||||||||   | | |||||||||||| | || || ||||||||||| ||| |||||    
T  57713 aaagacaacacttgctagagcagtttttaattccatagccgatcaatttgatgatttgtgttttcttcacgacgtaagggaaaattcagctaaatatggt 57614  T
Q  510 ctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctac 609  Q
     |||||||||| ||     |  |||||||||||   |||| ||||||||||||||||| ||||   |  ||||||||||||||||||||||||||||| |    
T  57613 ttagagcatctgcagggaaaacttctttccaaattagttgaattggacattaagttagtagatgtcaacgagggaattccaatcataaagcaaaggcttc 57514  T
Q  610 accggaaaaaggttctattggttcttgatgatgt 643  Q
    |||| || |||||| | ||| |||| ||||||||    
T  57513 accgaaagaaggttttgttgattctcgatgatgt 57480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 216 - 643
Target Start/End: Original strand, 35296 - 35723
Alignment:
Q  216 aggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggca 315  Q
    ||||||| |||| ||||||||| |||   | | ||||||||| ||||||| |||||||| |||| || ||||||| |||||| ||||||||| |||||      
T  35296 aggaatggatatgaatacaagtatattaagaagatagtcaaatatgtatcaaacaagatcaatcatgttcctttatatgttgccgattaccctgttggtc 35395  T
Q  316 tgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggacttggaggaatgggtaagac 415  Q
    |  ||||| | ||||| ||||||| ||||  | | || |||| |||||||  ||||||  ||||| |||| ||||||||   ||| ||||| || |||||    
T  35396 tcaagtctagggtcctaaaagtaacttcatgtgtggatgttggatctaatggtgaagttcagatgctagggatctatgggactggtggaattggaaagac 35495  T
Q  416 aactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagag 515  Q
    ||| |||||||||||||||||||||| | | ||||||||||||||  || | |||||||||||| | || || ||||||||| | ||| ||||| |||||    
T  35496 aacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttagag 35595  T
Q  516 catctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccgga 615  Q
    ||||| ||     |  | |||||||||   |||| ||||||| || |||||||||||   | |||||||||||||||||||||||||||||| ||||| |    
T  35596 catctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtcaatgagggaattccaatcataaagcaaaggcttcaccgaa 35695  T
Q  616 aaaaggttctattggttcttgatgatgt 643  Q
    | |||||||| ||| |||| ||||||||    
T  35696 agaaggttctgttgattctagatgatgt 35723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 198 - 625
Target Start/End: Original strand, 43508 - 43935
Alignment:
Q  198 aaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttg 297  Q
    |||||||| |||||||| ||||||| |||| ||||| ||||||| | | | ||||| ||| || |||||| ||| || ||||||| |||| || ||||||    
T  43508 aaacttatttgattgggtaggaatggatatgaatacgagtttattgagaagatagtaaaatatttatccagcaaaatcaatcgtgttcctctatatgttg 43607  T
Q  298 tcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggact 397  Q
      |||||||| |||||  |  ||||| | ||||| |||||||||  | |||| || || | ||||| |  || |||  | ||| |||| ||||||||       
T  43608 ctgattaccctgttggtctcgagtctagggtcctaaaagtaaataaatttcttgatgtcggatctactggtgtagttcatatgctagggatctatgggac 43707  T
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||| |||||||| |||||||| |||||||||||||||||||||| | | |||||||||||||| ||| |||||||||||||| |||| || |||||||||    
T  43708 tggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaattca 43807  T
Q  498 gcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataa 597  Q
     | ||| ||||| |||||||||| ||  |  |  | |||||||||   |||| |||||||||| |||| |||||||  |  |||||||||||||| ||||    
T  43808 actaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacattgagttgggagatatcaacgagggaattccaataataa 43907  T
Q  598 agcaaaggctacaccggaaaaaggttct 625  Q
    || ||||||| ||||| || ||||||||    
T  43908 agaaaaggcttcaccgaaacaaggttct 43935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 202 - 643
Target Start/End: Original strand, 28005 - 28446
Alignment:
Q  202 ttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcga 301  Q
    |||| |||||||| |||||||  ||| ||| | ||||||| | | | ||||||||| || |||| |||||||| |||| || |||||||||||||| |||    
T  28005 ttatttgattgggtaggaatggctatgaatgcgagtttatcgagaagatagtcaaatatatatctaacaagatcaatcatgttcctttacatgttgccga 28104  T
Q  302 ttacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggacttgga 401  Q
    |||||| |||||  |  | ||| | ||||| ||||||||||||||| | || |||| |||||||  |||||   |||||||||| ||||| ||   | |     
T  28105 ttaccctgttggtgttgaatctagggtcctaaaagtaaattcacttatggatgttggatctaatggtgaagcacagatgatagggatctacgggaatcgt 28204  T
Q  402 ggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaa 501  Q
    |||||||| |||||||| |||||||| ||||||||||||||  | || |||||||||||  || | |||||||||||| |||| || ||||||||||| |    
T  28205 ggaatgggaaagacaacacttgcaagggcagtttataattttatagccgatcaatttgatggtttgtgttttcttcacgatgtaagggaaaattcagcta 28304  T
Q  502 aacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagca 601  Q
    || ||||| ||||||||||  |     |  | |||||||||   |||| ||||||  ||||||||||||||   |  |||||||||||| || |||||||    
T  28305 aatatggtttagagcatctataggtaaagatcctttccaaattagttgaattggaagttaagttaggagatgtcaacgagggaattccagtcttaaagca 28404  T
Q  602 aaggctacaccggaaaaaggttctattggttcttgatgatgt 643  Q
    |||||| ||||| || || ||||||||| |||| ||||||||    
T  28405 aaggcttcaccgaaagaaagttctattgattctcgatgatgt 28446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 391 - 643
Target Start/End: Original strand, 16691611 - 16691863
Alignment:
Q  391 atggacttggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagaga 490  Q
    ||||| |||||||||| ||||| ||||| |||||  ||||| ||||||||||  |||||||||||||||||||| | |||||||||||  | ||||||||    
T  16691611 atggaattggaggaatcggtaaaacaacacttgctcgagcaatttataatttgattgctgatcaatttgaatgtttgtgttttcttcatgacgtgagaga 16691710  T
Q  491 aaattcagcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattcca 590  Q
    ||||||| | ||||||||  |||| ||||| ||| |     | |||||||||||  ||||||| ||||||||||||||| ||  |||||| |||||||||    
T  16691711 aaattcatctaaacatggcttagaacatcttcaagaaaggctcctttccaaaaccattggattagacattaagttaggacatgttagtgaaggaattcca 16691810  T
Q  591 atcataaagcaaaggctacaccggaaaaaggttctattggttcttgatgatgt 643  Q
    || ||||| ||||||||||| |  ||||||||||| ||| |||| ||||||||    
T  16691811 ataataaaacaaaggctacaacaaaaaaaggttcttttgattctcgatgatgt 16691863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 249 - 610
Target Start/End: Complemental strand, 5090533 - 5090169
Alignment:
Q  249 atagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttc 348  Q
    ||||||| | |||| ||||||||||| ||||   |||||||||||||||  ||||||||||||||  |  || |||| || || ||| || ||||||| |    
T  5090533 atagtcacatatgtctccaacaagatcaatcacactcctttacatgttgctgattacccggttggattagagcctcgtgttctgaaattatattcactac 5090434  T
Q  349 tagaagttgcatctaattatgaagtcaagatgataggtatctatggacttggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgc 448  Q
    | ||  |||  |||||| || ||||| | ||| |||| ||||||||   ||||||||||||||| || || |||| || |||| |||| |||||| ||||    
T  5090433 tggatattggttctaatgataaagtccaaatgctagggatctatgggactggaggaatgggtaaaaccacacttggaaaagcaatttacaatttcattgc 5090334  T
Q  449 tgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaaaa---catggtctagagcatctccaaaaggattttctttccaaaact 545  Q
    | |||||||||||||| | |||||||||| ||||||||||||||||||| | |||    ||||| ||||| |||| || |   |  | ||||  |||||     
T  5090333 tcatcaatttgaatgtctttgttttcttcccaatgtgagagaaaattcaactaaagtggatggtttagagtatcttcagagtaaggtcctttttaaaaca 5090234  T
Q  546 gttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctaca 610  Q
     |||||||||| |||| ||| |||||||  |||||||||||||||||||||||| ||||||||||    
T  5090233 attggattggaaattaggtttggagatatcagtgagggaattccaatcataaagaaaaggctaca 5090169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 224 - 499
Target Start/End: Complemental strand, 18699001 - 18698726
Alignment:
Q  224 atatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtct 323  Q
    |||| ||||||||||||| || |||||||||||| | || ||||||||||| | ||||   || |||||||||| | ||||||| |||||  ||||||||    
T  18699001 atatgaatacaagtttattggagatatagtcaaatacgtctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttggattgcagtct 18698902  T
Q  324 cgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggacttggaggaatgggtaagacaactcttg 423  Q
    ||||| |   |||| ||  | ||||| ||    | |||| || ||| ||||   ||| ||||  | |||||  ||||||| ||||||||  |||| ||||    
T  18698901 cgagtacaacaagtgaaagcgcttcttgataaaggatctgatgatggagtccgcatgttaggactttatggcattggaggcatgggtaaatcaacacttg 18698802  T
Q  424 caagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    | | |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  18698801 cgaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 18698726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 397 - 499
Target Start/End: Complemental strand, 18678988 - 18678886
Alignment:
Q  397 ttggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattc 496  Q
    ||||||| ||||||||   ||| ||||||| |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| |||||    
T  18678988 ttggaggcatgggtaaattaacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattc 18678889  T
Q  497 agc 499  Q
    |||    
T  18678888 agc 18678886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 18074529 - 18074590
Alignment:
Q  415 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttctt 476  Q
    |||| |||||||||||| | |||||||| |||||||||||||||||| || |||||||||||    
T  18074529 caacacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttctt 18074590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 499
Target Start/End: Complemental strand, 18723513 - 18723411
Alignment:
Q  397 ttggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattc 496  Q
    ||||||| ||||| ||  |||| ||||||| || | ||||||||||  |||||||||||||||||||   |||||||||| | || |||||||| |||||    
T  18723513 ttggaggcatgggaaaatcaacacttgcaaaaggaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaacgtgagagagaattc 18723414  T
Q  497 agc 499  Q
    |||    
T  18723413 agc 18723411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 499
Target Start/End: Complemental strand, 18730896 - 18730830
Alignment:
Q  433 tttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  18730896 tttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 18730830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 18654857 - 18654805
Alignment:
Q  445 ttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||||||||||||||||||   |||||||||| | ||||||||||||||||||    
T  18654857 ttgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagaaaattca 18654805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 397 - 644
Target Start/End: Complemental strand, 28127107 - 28126860
Alignment:
Q  397 ttggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattc 496  Q
    |||||||  |||||||  |||| ||||||| |||| ||||||||||| ||||||||||||||||| || ||||||||||  |  |||||||||| | |||    
T  28127107 ttggaggcttgggtaaatcaacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggtttatgttttctagaagatgtgagagagatttc 28127008  T
Q  497 agcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcata 596  Q
    | |   | ||  | |  | ||||||||| |  |  | ||||  ||||| ||||||||||||||||||||||||| |  ||||||||||||| ||||||||    
T  28127007 aactccatataatttgaaacatctccaagaaaagctccttttgaaaacagttggattggacattaagttaggaggtgttagtgagggaattgcaatcata 28126908  T
Q  597 aagcaaaggctacaccggaaaaaggttctattggttcttgatgatgtc 644  Q
    || |||||||||  | | || ||| |||| ||| ||||||||||||||    
T  28126907 aaacaaaggctatgcagaaagaagattcttttgattcttgatgatgtc 28126860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 267 - 610
Target Start/End: Original strand, 26136508 - 26136851
Alignment:
Q  267 aacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaatt 366  Q
    |||||||| || |||| || ||||||||||| |||| |||| |||||  |  |||||||| | ||  ||||||| ||||||||||| ||||  | | ||     
T  26136508 aacaagatcaaccgtgttcttttacatgttgccgatcaccccgttgggctcgagtctcgactgctgcaagtaaagtcacttctagatgttgactgtgata 26136607  T
Q  367 atgaagtcaagatgataggtatctatggacttggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgt 466  Q
    ||| ||||    |||| || || ||||||  ||||||| | ||||| ||||| ||| |  ||||||||||||||||  |||| |||||||||||| |  |    
T  26136608 atggagtcggtctgattgggatatatggaagtggaggattaggtaaaacaacacttactcgagcagtttataatttgattgcggatcaatttgaaggatt 26136707  T
Q  467 atgttttcttcacaatgtgagagaaaattcagcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagtta 566  Q
     || || |||||||||||| ||||||||||||  ||| ||||  ||||  |||||||| || |  | || |||||| |  | |||||||| |||||||||    
T  26136708 gtgcttccttcacaatgtgcgagaaaattcagttaaatatggcttagaatatctccaagagcagctcctctccaaatcaatcggattggagattaagtta 26136807  T
Q  567 ggagatagtagtgagggaattccaatcataaagcaaaggctaca 610  Q
    ||| ||  |||| | |||||||||||||||||  ||||||||||    
T  26136808 ggacatgttagtaaaggaattccaatcataaaagaaaggctaca 26136851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 397 - 499
Target Start/End: Complemental strand, 267772 - 267670
Alignment:
Q  397 ttggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattc 496  Q
    |||||||  |||||||  |||| |||||||||||| | ||||||||  ||||||||||||||||| |  |||||||||||||  ||||||||||||||||    
T  267772 ttggaggcttgggtaaatcaacccttgcaagagcaatctataattttattgctgatcaatttgaaggattatgttttcttcatgatgtgagagaaaattc 267673  T
Q  497 agc 499  Q
    |||    
T  267672 agc 267670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 541 - 644
Target Start/End: Complemental strand, 28163664 - 28163561
Alignment:
Q  541 aaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataaagcaaaggctacaccggaaaaaggttctattggttcttgatga 640  Q
    |||| ||| ||| ||||||||||||||||| |  ||||||||||||| |||||||||| |||||||||||  | || ||  |||| ||| ||||||||||    
T  28163664 aaacagttagatcggacattaagttaggaggtgttagtgagggaattacaatcataaaacaaaggctacatagaaataaaattcttttgattcttgatga 28163565  T
Q  641 tgtc 644  Q
    ||||    
T  28163564 tgtc 28163561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 497
Target Start/End: Complemental strand, 28163798 - 28163707
Alignment:
Q  406 tgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    |||||||  |||| ||||||| |||| ||||||||||| ||||||||||||||||| || ||||||||||  |  |||||||||| ||||||    
T  28163798 tgggtaaatcaacacttgcaaaagcaatttataatttcattgctgatcaatttgaaggtttatgttttctagaagatgtgagagagaattca 28163707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 398 - 499
Target Start/End: Complemental strand, 2970 - 2869
Alignment:
Q  398 tggaggaatgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 497  Q
    ||||||| |||||||  |||| ||||||| |||| ||||||||||  |||||||||||||||||||   |||||||||| | ||||||||||| ||||||    
T  2970 tggaggattgggtaaatcaacacttgcaaaagcaatttataattttattgctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattca 2871  T
Q  498 gc 499  Q
    ||    
T  2870 gc 2869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 406 - 499
Target Start/End: Complemental strand, 29273261 - 29273168
Alignment:
Q  406 tgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    |||||||  |||| |||||||||||| | ||||||||  |||||||||||||||||  | |||||||||||||  |||||||||| ||||||||    
T  29273261 tgggtaaatcaacccttgcaagagcaatctataatttttttgctgatcaatttgaagatttatgttttcttcatgatgtgagagagaattcagc 29273168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 643
Target Start/End: Original strand, 16440991 - 16441052
Alignment:
Q  582 ggaattccaatcataaagcaaaggctacaccggaaaaaggttctattggttcttgatgatgt 643  Q
    |||||||||||||||||||| ||| |   ||||||||||||||| ||||||||||| |||||    
T  16440991 ggaattccaatcataaagcagaggttcagccggaaaaaggttcttttggttcttgacgatgt 16441052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 60337 - 60398
Alignment:
Q  415 caactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttctt 476  Q
    |||| |||||||||||| | |||||||| |||||||||||||||||| || |||||||||||    
T  60337 caacacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttctt 60398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 499
Target Start/End: Original strand, 8246 - 8339
Alignment:
Q  406 tgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    |||||||  |||| |||| || |||| ||||||||||  || ||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  8246 tgggtaaatcaacacttggaaaagcaatttataattttatttctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 8339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 328
Target Start/End: Original strand, 8064 - 8168
Alignment:
Q  224 atatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtct 323  Q
    |||| ||||||||||||| || |||||||||||| |  | ||||||||||| | ||||   || |||||||||| | ||||||| |||||  | ||||||    
T  8064 atatgaatacaagtttattggcgatatagtcaaatacatctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttggattacagtct 8163  T
Q  324 cgagt 328  Q
    |||||    
T  8164 cgagt 8168  T

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Target: scaffold0277 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 499
Target Start/End: Complemental strand, 4135 - 4042
Alignment:
Q  406 tgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    |||||||  |||| |||| || |||| ||||||||||  |||||||| ||||||||||   |||||||||| | ||||||||||| ||||||||    
T  4135 tgggtaaatcaacacttggaaaagcaatttataattttattgctgatgaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 4042  T

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Target: scaffold0277; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 499
Target Start/End: Complemental strand, 13098 - 13005
Alignment:
Q  406 tgggtaagacaactcttgcaagagcagtttataatttcgttgctgatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagc 499  Q
    |||||||  |||| |||| || |||| ||||||||||  || ||||||||||||||||   |||||||||| | ||||||||||| ||||||||    
T  13098 tgggtaaatcaacacttggaaaagcaatttataattttatttctgatcaatttgaatgctcatgttttcttgaaaatgtgagagagaattcagc 13005  T

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Target: scaffold0277; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 328
Target Start/End: Complemental strand, 13280 - 13176
Alignment:
Q  224 atatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttgtcgattacccggttggcatgcagtct 323  Q
    |||| ||||||||||||| || |||||||||||| |  | ||||||||||| | ||||   || |||||||||| | ||||||| |||||  | ||||||    
T  13280 atatgaatacaagtttattggcgatatagtcaaatacatctccaacaagatcagtcgtcagcccttacatgttgccaattaccctgttggattacagtct 13181  T
Q  324 cgagt 328  Q
    |||||    
T  13180 cgagt 13176  T

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