View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_121 (Length: 249)
Name: NF20262_low_121
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_121 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 22162897 - 22162648
Alignment:
| Q |
14 |
tactaacaacttgaataatttaaataacagttgcatcacaatcttttatattgtggagaatatatcgtaatcaaataaggccgatgttacttcaa----- |
108 |
Q |
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| T |
22162897 |
tactaacaacttgaataatttaaataacagtggcatcacaatcttttatattgtggagaatatatcgtaatcaaataaggccgatgttacttcaattttg |
22162798 |
T |
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| Q |
109 |
---------------tttatattgttgtctaaatcggagtcacgaatctttattataatctataagcatagtggaattgatgaattataaaatatgttag |
193 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22162797 |
acaacataaaaaacttttatattgttgtc------ggagtcacgaatctttattataatctataagcatggtggaattgatgaattataaaatatgttag |
22162704 |
T |
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| Q |
194 |
ttacctgaattgagtctgtgtttctctacccatgcccattttggttgccttgttgc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22162703 |
ttacctgaattgagtctgtgtttctctacccatgcccattttggttgccttgttgc |
22162648 |
T |
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