View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_122 (Length: 249)
Name: NF20262_low_122
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_122 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 16410364 - 16410601
Alignment:
| Q |
1 |
gattgcagattagatagatttgaatggaagatcagaagcacttaaaaatggctagttcaaagtagttcagaaccagagttcaaaaccaatctcatctaaa |
100 |
Q |
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| T |
16410364 |
gattgcagattagatagatttgaatggaagatcagaagcacttaaaaatggctagttcaaagaagttcagaaccagagttcaaaaccaatctcatctaaa |
16410463 |
T |
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| Q |
101 |
aagtccaagatcaaatttgaaattagtttgttaatgataaatgttagtttgttaatttctttttgagggaaagtgttattatgttgattgttatgttggt |
200 |
Q |
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| T |
16410464 |
aagtccaagatcaaatttgaaattagtttgttaatgataaatgttagtttgttaatttctttttgagggaaagtgttattatgttgattgttatgttggt |
16410563 |
T |
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| Q |
201 |
atttttctcttgtaacatcacatatgactttaaatatt |
238 |
Q |
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| T |
16410564 |
atttttctcttgtaacatcccatacgactttaaatatt |
16410601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 16440249 - 16440375
Alignment:
| Q |
9 |
attagatagatttgaatggaagatcagaagcacttaaaaatggctagttcaaagtagttcagaaccagagttcaaaaccaatctcatctaaaaagtccaa |
108 |
Q |
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| T |
16440249 |
attatatagatctgaatgaaagatcagaagcacttacgagtggctagttcaaagaagttcaaaatcagagttcaagaccaatctcatctaaaaagtcaaa |
16440348 |
T |
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| Q |
109 |
gatcaaatttgaaattagtttgttaat |
135 |
Q |
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| T |
16440349 |
gatcaagtttgaagttagtttgttaat |
16440375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 16440362 - 16440437
Alignment:
| Q |
143 |
gttagtttgttaatttctttttgagggaaagtgttattatgttgattgttatgttggtatttttctcttgtaacat |
218 |
Q |
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| T |
16440362 |
gttagtttgttaatttctttttgagggaatgtgttattacattaattgttatgttggtatttatctcttgtaacat |
16440437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 47774033 - 47774103
Alignment:
| Q |
134 |
atgataaatgttagtttgttaatttctttttgagggaaagtgttattatgttgattgttatgttggtatttt |
205 |
Q |
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| T |
47774033 |
atgacaaatgttagtatgttaattt-tttttgaaggaaaatgttagtatgttaattgttatgttagtatttt |
47774103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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