View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_127 (Length: 242)
Name: NF20262_low_127
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_127 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 183084 - 183290
Alignment:
| Q |
17 |
agacatgttatttctattgtttcagtggacccaaaagacccaaattgagaaatttacgtacagtgaagatgtgcaggttagccgtattttcacatattat |
116 |
Q |
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| T |
183084 |
agacatgttatttctattgtttcagtggacccaaaagacccaaattgagaaatttacatacagtgaagatgtgcaggttagccgtattttcacatattat |
183183 |
T |
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| Q |
117 |
ttaagtggtttgaactcttgaatgcttcttgattgtttaacaatagcgtcttatctgtatttgactgtggttaccagtgtacagttttggaagtcaaggt |
216 |
Q |
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| T |
183184 |
ttaagtggtttgaactcttgaatgcttcttgattgtttaacaatagcgtcttatctgtatttgactgtggttaccagtgtactgttttggaagtcaaggt |
183283 |
T |
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| Q |
217 |
tattgaa |
223 |
Q |
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||||||| |
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| T |
183284 |
tattgaa |
183290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 591293 - 591088
Alignment:
| Q |
18 |
gacatgttatttctattgtttcagtggacccaaaagacccaaattgagaaatttacgtacagtgaagatgtgcaggttagccgtattttcacatattatt |
117 |
Q |
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||||||||||||||||||||| ||||||||||||||| || |||||| |||| ||||||||||| || |||||||||| |||||||||||| |||| |
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| T |
591293 |
gacatgttatttctattgtttggttggacccaaaagaccatgatcgagaaacttacttacagtgaagacgtacaggttagccttattttcacataatatt |
591194 |
T |
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| Q |
118 |
taagtggtttgaactcttgaatgcttcttgattgtttaacaatagcgtcttatctg-tatttgactgtggttaccagtgtacagttttggaagtcaaggt |
216 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||| | | || ||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
591193 |
gaagtgg-ttgaactgttgaatgcttcttgattgtttaacaatagagacctaactgttatttgactgtggttaccagtgtactgttttggaagtcaaggt |
591095 |
T |
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| Q |
217 |
tattgaa |
223 |
Q |
| |
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||||||| |
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| T |
591094 |
tattgaa |
591088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 44628086 - 44628135
Alignment:
| Q |
174 |
tatttgactgtggttaccagtgtacagttttggaagtcaaggttattgaa |
223 |
Q |
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| T |
44628086 |
tatttgactgtggctaccagtgtaccgttttggaagtcaaggttattgaa |
44628135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 44606602 - 44606647
Alignment:
| Q |
174 |
tatttgactgtggttaccagtgtacagttttggaagtcaaggttat |
219 |
Q |
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| T |
44606602 |
tatttgactgtgtctaccagtgtaccgttttggaagtcaaggttat |
44606647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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