View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_129 (Length: 240)
Name: NF20262_low_129
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_129 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 32267456 - 32267686
Alignment:
| Q |
11 |
catcatcatttgaagctcctagtttgactataaagtctgcacactggtttaatttgagattgaatatgtcttgcattcttcttaataaagtggtttctta |
110 |
Q |
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| T |
32267456 |
catcatcatttgaagctcctagtttggctacaaagtatgcacaccggtttaatttgagattgaatatgtcttgcattcttcttaataaagtggtttctta |
32267555 |
T |
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| Q |
111 |
tattnnnnnnnnn-cgatcacacctttgttaggtacaaaccaaatgacatccaataaatgacacatcaaattttaggactgaaattttaccatgacccaa |
209 |
Q |
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| T |
32267556 |
tattaaaaaaaaaacgatcacacctttgttaggtaccaaccaaatgacatccaataaatgacacatcaaattttaggactgaaattttaccatgacccaa |
32267655 |
T |
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| Q |
210 |
cgtttcaatgtactatcaaaagtgccgaatt |
240 |
Q |
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| T |
32267656 |
cgtttcaatgtactatcaaaactgccgaatt |
32267686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 32271744 - 32271797
Alignment:
| Q |
184 |
aggactgaaattttaccatgacccaacgtttcaatgtactatcaaaagtgccgaatt |
240 |
Q |
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| T |
32271744 |
aggactgaaattttaccatggcccaacgtttgaatg---tatcaaaagtgccgaatt |
32271797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 14446684 - 14446615
Alignment:
| Q |
168 |
tgacacatcaaattttaggactgaaattttaccatgacccaacgtttcaatgtactatcaaaagtgccgaatt |
240 |
Q |
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| T |
14446684 |
tgacacctcaaattgaaggactgaaattttaccatggtccaacgtttgaatg---tatcataagtgccgaatt |
14446615 |
T |
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