View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_13 (Length: 629)
Name: NF20262_low_13
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 297 - 474
Target Start/End: Complemental strand, 15627670 - 15627500
Alignment:
| Q |
297 |
gtagctgttaagaaaatttcacgtgaatcaaaacaaaagctgggggaatttgtgtctgaattctgaaatcaccaccataggccagcttcgccactggaat |
396 |
Q |
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| T |
15627670 |
gtagctgttaagagattttcacatgaatcaaaacaagggcttagggaattcgtgtctgaa-------atcgccagcataggccggcttcgtcacaggaat |
15627578 |
T |
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| Q |
397 |
ttggttccgttacttgggtggtgtcactgtaaaggcgacctcctacttgtttacgatgtcacggctaatggaagctta |
474 |
Q |
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| T |
15627577 |
ttagttcagctacttggatggtgtcgctgcaaaggcgacctgctacttgtgtatgacttcatggctaatggaagctta |
15627500 |
T |
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Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 372 - 474
Target Start/End: Original strand, 22934064 - 22934166
Alignment:
| Q |
372 |
cataggccagcttcgccactggaatttggttccgttacttgggtggtgtcactgtaaaggcgacctcctacttgtttacgatgtcacggctaatggaagc |
471 |
Q |
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| T |
22934064 |
cataggccggcttcgccatcggaatttggttcagttacttgggtggtgtcgccgcagaggcgacctcctacttgtgtacgatttcatgtcaaatggaagc |
22934163 |
T |
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| Q |
472 |
tta |
474 |
Q |
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| T |
22934164 |
tta |
22934166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 613
Target Start/End: Original strand, 16861859 - 16861901
Alignment:
| Q |
571 |
agcattgatacaagagtttcctatgaacctcaatgactatatt |
613 |
Q |
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| T |
16861859 |
agcattgatagaagagtttcctatgaacctcaatgactatatt |
16861901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 565
Target Start/End: Complemental strand, 7284944 - 7284868
Alignment:
| Q |
492 |
ccttaattattccttatttagcacgtcatatttttgcataagctca---gttatgtaaaattgacaggctaaacctc |
565 |
Q |
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| T |
7284944 |
ccttaattattctttatttagcacttcaaatttccgcataggctcattggttatgtaacattggcaggctaaacctc |
7284868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 48019426 - 48019365
Alignment:
| Q |
101 |
tgattcctgcagttggcagattgtattgaaattgatttccctgcattggttatactgctcat |
162 |
Q |
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| T |
48019426 |
tgattcctgtagttggcagattgtgttgagattggtcttcctgcattggttattctggtcat |
48019365 |
T |
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