View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_low_130 (Length: 238)

Name: NF20262_low_130
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_low_130
NF20262_low_130
[»] chr7 (4 HSPs)
chr7 (5-224)||(18560038-18560257)
chr7 (40-189)||(18562389-18562542)
chr7 (31-179)||(13809364-13809518)
chr7 (42-117)||(7227710-7227782)
[»] chr4 (10 HSPs)
chr4 (5-71)||(37739584-37739650)
chr4 (5-71)||(48013212-48013278)
chr4 (79-112)||(8877389-8877422)
chr4 (137-182)||(22172326-22172371)
chr4 (5-112)||(8871528-8871633)
chr4 (1-96)||(52530752-52530845)
chr4 (1-101)||(24150880-24150977)
chr4 (16-104)||(1388069-1388156)
chr4 (74-130)||(5681608-5681664)
chr4 (74-130)||(35510171-35510225)
[»] chr3 (10 HSPs)
chr3 (31-189)||(17546059-17546220)
chr3 (74-130)||(28007944-28007999)
chr3 (1-101)||(6434582-6434679)
chr3 (74-130)||(31549457-31549513)
chr3 (9-71)||(18542871-18542934)
chr3 (79-178)||(3292836-3292941)
chr3 (5-62)||(22993509-22993566)
chr3 (81-189)||(30219884-30219998)
chr3 (138-185)||(19301446-19301494)
chr3 (137-189)||(22993637-22993689)
[»] chr6 (5 HSPs)
chr6 (5-189)||(13021076-13021258)
chr6 (31-152)||(11247920-11248044)
chr6 (5-71)||(11192406-11192472)
chr6 (139-185)||(12988079-12988125)
chr6 (14-51)||(12987651-12987688)
[»] chr1 (5 HSPs)
chr1 (5-113)||(11666818-11666923)
chr1 (14-65)||(16062044-16062095)
chr1 (14-65)||(16060506-16060557)
chr1 (14-71)||(7635881-7635937)
chr1 (19-65)||(16056638-16056684)
[»] chr8 (3 HSPs)
chr8 (40-189)||(30785033-30785189)
chr8 (40-130)||(21279623-21279711)
chr8 (81-130)||(17931159-17931206)
[»] chr5 (1 HSPs)
chr5 (9-189)||(21915240-21915418)
[»] chr2 (2 HSPs)
chr2 (44-178)||(30926650-30926790)
chr2 (74-130)||(25138816-25138872)
[»] scaffold0233 (1 HSPs)
scaffold0233 (147-189)||(10057-10099)
[»] scaffold1755 (1 HSPs)
scaffold1755 (74-131)||(320-377)
[»] scaffold0412 (1 HSPs)
scaffold0412 (1-101)||(338-435)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 18560038 - 18560257
Alignment:
Q  5 ccacgagggccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggtttgatt 104  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18560038 ccacgaggaccgtgttaatctcaagtaaacaatagcattattaaataggatgtgtaaagtttatttttagttttccctaggcagtagatttggtttgatt 18560137  T
Q  105 gcataaaaattaatgacagaaaataattgattaaaaaatatagagagatgataccaggtcttttgaatcctctgagttcccctaaaggcaaacaacctaa 204  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18560138 gcataaaaattaacgacagaaaataattgattaaaaaatatagagagatgagaccaggtctttcgaatcctctgagttcccctaaaggcaaacaacctaa 18560237  T
Q  205 gcttcttttggtcttctgtg 224  Q
    ||||||||||||||||||||    
T  18560238 gcttcttttggtcttctgtg 18560257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 189
Target Start/End: Original strand, 18562389 - 18562542
Alignment:
Q  40 cgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggtttgattgcataaaaattaatgacagaaaataa----ttgat 135  Q
    |||| ||||||| ||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  18562389 cgttgttaaataggatgtgtaaagtttattt--agtttgccctaggtagtagatttggtttgattgcataaaaattaatgacagaaaataaagatttgat 18562486  T
Q  136 taaaaaatat--agagagatgataccaggtcttttgaatcctctgagttcccctaa 189  Q
    || |||||||  |||||||||| |||| ||||||  ||||||||||||| ||||||    
T  18562487 tagaaaatatagagagagatgagaccatgtctttaaaatcctctgagtttccctaa 18562542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 13809364 - 13809518
Alignment:
Q  31 aaacaatagcgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggtttgattgcataaaaatt--aatgacagaaaat 128  Q
    ||||| |||||||||||||||  ||| |||||  |||||||  |||| |||||| ||||||||||||||||||||||||||| ||  ||| ||||||| |    
T  13809364 aaacagtagcgttattaaatagaatgggtaaaagttatttt--gtttaccctagacagtagatttggtttgattgcataaaattttaaataacagaaagt 13809461  T
Q  129 aa----ttgattaaaaaatat--agagagatgataccaggtcttttgaatcctctga 179  Q
    ||    ||||||| |||||||  |||||||||| | || |||||| |||||||||||    
T  13809462 aaatttttgattagaaaatatagagagagatgagatcaagtctttcgaatcctctga 13809518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 7227782 - 7227710
Alignment:
Q  42 ttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggtttgattgcataaaaattaa 117  Q
    |||||||||| ||||||||||  |||||||    ||||||||||||||||||||| ||||||||||||||| ||||    
T  7227782 ttattaaataggatgtgtaaaagttattttg---ttgccctaggcagtagatttgatttgattgcataaaatttaa 7227710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 37739584 - 37739650
Alignment:
Q  5 ccacgagggccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttt 71  Q
    |||||||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||    
T  37739584 ccacgaggaccgtgttaatctcaagtaaacaatagcgatatgaaataggatgtgtaaagtttatttt 37739650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 48013212 - 48013278
Alignment:
Q  5 ccacgagggccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttt 71  Q
    |||||||| |||||||||| ||||||||||||| | ||||| |||||||||| ||||||||||||||    
T  48013212 ccacgaggaccgtgttaatttcaagtaaacaattgtgttatgaaatatgatgcgtaaagtttatttt 48013278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 8877389 - 8877422
Alignment:
Q  79 ccctaggcagtagatttggtttgattgcataaaa 112  Q
    ||||||||||||||||||||||||||||||||||    
T  8877389 ccctaggcagtagatttggtttgattgcataaaa 8877422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 22172326 - 22172371
Alignment:
Q  137 aaaaaatatagagagatgataccaggtcttttgaatcctctgagtt 182  Q
    |||| |||||||||||||| || |||||||||||||||||||||||    
T  22172326 aaaagatatagagagatgagactaggtcttttgaatcctctgagtt 22172371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 8871528 - 8871633
Alignment:
Q  5 ccacgagggccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggtttgatt 104  Q
    |||||||| | |||||||  ||||  ||||||| | |||||||  || ||||||||||  |||||||  | || |||| |||||||||||||||||||||    
T  8871528 ccacgaggactgtgttaacttcaataaaacaattgtgttattacttaggatgtgtaaaagttatttt--ggtttccctcggcagtagatttggtttgatt 8871625  T
Q  105 gcataaaa 112  Q
    ||||||||    
T  8871626 gcataaaa 8871633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 52530752 - 52530845
Alignment:
Q  1 gttcccacgagggccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttg 96  Q
    |||||||||||| | ||||||||||||| | | ||||| ||||| ||  || |||||||||| ||   ||||||||||||||||||||||| ||||    
T  52530752 gttcccacgaggactgtgttaatctcaatttagcaataacgttaatatctaagatgtgtaaatttc--ttttagtttgccctaggcagtagttttg 52530845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 24150977 - 24150880
Alignment:
Q  1 gttcccacgagggccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggttt 100  Q
    |||||||||||| | ||||||||||||| | | ||||| ||||| ||  || |||||||||| ||   |||||||| |||||||||||||| ||||||||    
T  24150977 gttcccacgaggactgtgttaatctcaatttagcaataacgttaatatctaggatgtgtaaatttc--ttttagtt-gccctaggcagtagttttggttt 24150881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 1388156 - 1388069
Alignment:
Q  16 gtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggtttgatt 104  Q
    |||||||||||||  |  ||||||| |||||||||| ||||| ||||  |||||||  ||||  |||||||| ||||||||||||||||    
T  1388156 gtgttaatctcaataattcaatagctttattaaataggatgtataaaagttattttg-gtttcgcctaggcattagatttggtttgatt 1388069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 5681664 - 5681608
Alignment:
Q  74 gtttgccctaggcagtagatttggtttgattgcataaaaattaatgacagaaaataa 130  Q
    ||||||||| ||||||||||||| || |||||||||||| | ||| ||| |||||||    
T  5681664 gtttgccctgggcagtagatttgattggattgcataaaattaaataacataaaataa 5681608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 35510225 - 35510171
Alignment:
Q  74 gtttgccctaggcagtagatttggtttgattgcataaaaattaatgacagaaaataa 130  Q
    |||||||||||||||| |||| |||||| |||||||||| | |||||||||||||||    
T  35510225 gtttgccctaggcagttgatt-ggtttgtttgcataaaagt-aatgacagaaaataa 35510171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 17546220 - 17546059
Alignment:
Q  31 aaacaatagcgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggtttgattgcataaaaattaatgacagaaaataa 130  Q
    ||||||||| ||||||||||| |||| |||||  |||||||  ||||||||||| |||||||||| |||||||||||||||| | ||| | |||||||||    
T  17546220 aaacaatagagttattaaataggatgcgtaaaagttatttt--gtttgccctagacagtagatttagtttgattgcataaaactaaataatagaaaataa 17546123  T
Q  131 ----ttgattaaaaaatat--agagagatgataccaggtcttttgaatcctctgagttcccctaa 189  Q
        ||||||| |||||||  |||||||||| | ||| ||||| ||||| |||| ||||||||||    
T  17546122 atatttgattagaaaatatggagagagatgagatcagatctttcgaatcttctg-gttcccctaa 17546059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 28007944 - 28007999
Alignment:
Q  74 gtttgccctaggcagtagatttggtttgattgcataaaaattaatgacagaaaataa 130  Q
    ||||||| ||||||||||||||| ||||||||||| |||| ||||||||||||||||    
T  28007944 gtttgccttaggcagtagatttgatttgattgcat-aaaagtaatgacagaaaataa 28007999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 6434582 - 6434679
Alignment:
Q  1 gttcccacgagggccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggttt 100  Q
    |||||||||||| | ||||||||||||| | |||||||  |||| ||  |||||||||||||  ||  |||||| |||||||||||||||| ||||||||    
T  6434582 gttcccacgaggactgtgttaatctcaatttaacaataaggttaatatttatgatgtgtaaa--tttcttttag-ttgccctaggcagtagttttggttt 6434678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 31549513 - 31549457
Alignment:
Q  74 gtttgccctaggcagtagatttggtttgattgcataaaaattaatgacagaaaataa 130  Q
    |||| |||||||||||||||||| ||||||||||||||| | ||| ||| |||||||    
T  31549513 gtttaccctaggcagtagatttgatttgattgcataaaagtaaataacataaaataa 31549457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 18542934 - 18542871
Alignment:
Q  9 gagggccgtgttaatctcaa-gtaaacaatagcgttattaaatatgatgtgtaaagtttatttt 71  Q
    |||| |||||||||||||||  ||||||||| |||||||| ||| ||||||||| |||||||||    
T  18542934 gaggaccgtgttaatctcaatttaaacaataacgttattatataggatgtgtaatgtttatttt 18542871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 3292836 - 3292941
Alignment:
Q  79 ccctaggcagtagatttggtttgattgcataaaaattaat-----gacagaaaataattgattaaaaaatat-agagagatgataccaggtcttttgaat 172  Q
    |||||||||||||||||||| ||||||||||||  || ||      | || | ||| ||||||||||||||| |||||||||| | ||||||||||||||    
T  3292836 ccctaggcagtagatttggtatgattgcataaatttttatatagcaaaagtagatatttgattaaaaaatatgagagagatgagatcaggtcttttgaat 3292935  T
Q  173 cctctg 178  Q
    | ||||    
T  3292936 catctg 3292941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 22993509 - 22993566
Alignment:
Q  5 ccacgagggccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaa 62  Q
    ||||||||  |||||||||||||| ||||||||| || ||| ||||| ||||||||||    
T  22993509 ccacgaggatcgtgttaatctcaattaaacaataacgatatgaaataggatgtgtaaa 22993566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 30219884 - 30219998
Alignment:
Q  81 ctaggcagtagatttggtttgattgcataaaaatt-aatgacagaaaataa----ttgattaaaaaatat-agagagatgataccaggtcttttgaatcc 174  Q
    ||||||||| |||||||||||||||||||||| || ||| || |||| |||    ||||||| | ||||| |||||||||| | || |||||| |||||     
T  30219884 ctaggcagttgatttggtttgattgcataaaatttaaataactgaaagtaaaggtttgattagagaatatgagagagatgagatcatgtctttcgaatca 30219983  T
Q  175 tctgagttcccctaa 189  Q
    ||| |||||||||||    
T  30219984 tctaagttcccctaa 30219998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 19301446 - 19301494
Alignment:
Q  138 aaaaatata-gagagatgataccaggtcttttgaatcctctgagttccc 185  Q
    ||||||||| ||||||||| || |||||||| |||||||||||||||||    
T  19301446 aaaaatatatgagagatgagactaggtctttcgaatcctctgagttccc 19301494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 22993637 - 22993689
Alignment:
Q  137 aaaaaatatagagagatgataccaggtcttttgaatcctctgagttcccctaa 189  Q
    |||| ||| |||||||||| || |||||||| ||||||||| |||||||||||    
T  22993637 aaaagatagagagagatgagactaggtctttcgaatcctctaagttcccctaa 22993689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 13021076 - 13021258
Alignment:
Q  5 ccacgagggccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggtttgatt 104  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||| ||||||  ||||| ||| ||||| |||| |    ||    
T  13021076 ccacgaggaccgtgttaatctcaagtaaacaatagcgttatgaaataggatgtttaatgttta-ttttag--tgcccgaggtagtaggtttgtt----tt 13021168  T
Q  105 gcataa-aaattaatgacagaaaataa--ttgattaaaaaatat--agagagatgataccaggtcttttgaatcctctgagttcccctaa 189  Q
    |||||| || | |||  ||||||||||  ||| ||| |||||||  |||||||||| |  |||||||||||||||||| |||||||||||    
T  13021169 gcataacaagtaaatagcagaaaataaagttgtttataaaatatagagagagatgagagtaggtcttttgaatcctctaagttcccctaa 13021258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 11248044 - 11247920
Alignment:
Q  31 aaacaatagcgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggtttgattgcataaaaatt-aatgacagaaaata 129  Q
    ||||| |||||||||||| || ||||||| ||  |||||||  |||||||||||| |||||||||||||||||||||||||| || ||| ||||||| ||    
T  11248044 aaacagtagcgttattaagtaggatgtgttaaagttatttt--gtttgccctaggtagtagatttggtttgattgcataaaatttaaataacagaaagta 11247947  T
Q  130 a----ttgattaaaaaatatagagaga 152  Q
    |    ||||||| ||||||||||||||    
T  11247946 aagatttgattagaaaatatagagaga 11247920  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 11192406 - 11192472
Alignment:
Q  5 ccacgagggccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttt 71  Q
    |||||||  |||||||||||||||||||||||| || |||| ||||| |||| ||||||||||||||    
T  11192406 ccacgagtaccgtgttaatctcaagtaaacaattgcattatgaaataagatgagtaaagtttatttt 11192472  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 12988079 - 12988125
Alignment:
Q  139 aaaatatagagagatgataccaggtcttttgaatcctctgagttccc 185  Q
    ||||||||||||||||  || |||||||||||||||||| |||||||    
T  12988079 aaaatatagagagatgtgactaggtcttttgaatcctctaagttccc 12988125  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 12987651 - 12987688
Alignment:
Q  14 ccgtgttaatctcaagtaaacaatagcgttattaaata 51  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  12987651 ccgtgttaatctcaagtaaacagtagcgttatgaaata 12987688  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 11666818 - 11666923
Alignment:
Q  5 ccacgagggccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggtttgatt 104  Q
    |||| ||| ||||| |||| ||||  ||||| |||||||| |||||| ||||||||||| |||||||    |||||||||||||||||||||||||||||    
T  11666818 ccacaaggaccgtgataatatcaataaaacagtagcgttaataaataggatgtgtaaaggttattttg---ttgccctaggcagtagatttggtttgatt 11666914  T
Q  105 gcataaaaa 113  Q
    ||| |||||    
T  11666915 gcaaaaaaa 11666923  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 16062044 - 16062095
Alignment:
Q  14 ccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtt 65  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||||||||||    
T  16062044 ccgtgttaatctcaagtaaacaatagcattatgaaataagatgtgtaaagtt 16062095  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 16060506 - 16060557
Alignment:
Q  14 ccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtt 65  Q
    ||||||||||||||||||||||||||| |||| ||| | |||||||||||||    
T  16060506 ccgtgttaatctcaagtaaacaatagcattatgaaacaggatgtgtaaagtt 16060557  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 7635937 - 7635881
Alignment:
Q  14 ccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttt 71  Q
    ||||||||||||||| |||||||||| ||||| ||||| |||||||||| ||||||||    
T  7635937 ccgtgttaatctcaattaaacaatagtgttatgaaataggatgtgtaaa-tttatttt 7635881  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 16056638 - 16056684
Alignment:
Q  19 ttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtt 65  Q
    |||||||||||||||| ||||| |||| ||||| |||||||||||||    
T  16056638 ttaatctcaagtaaacgatagcattatgaaataggatgtgtaaagtt 16056684  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 189
Target Start/End: Complemental strand, 30785189 - 30785033
Alignment:
Q  40 cgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggtttgattgcataaaaattaatgacagaaaata---attgatt 136  Q
    ||||||||| || ||||| |||||||||| ||| |||||||||||||||| ||||||||||||||  || |||   ||| ||||||||||   |||||||    
T  30785189 cgttattaattaggatgtataaagtttatattt-gtttgccctaggcagttgatttggtttgattttatgaaatcaaataacagaaaataaagattgatt 30785091  T
Q  137 aa-aaaatat----agagagatgataccaggtcttttgaatcctctgagttcccctaa 189  Q
    || |||||||    |||||| ||| | ||||||||| ||||||||| |||||||||||    
T  30785090 aagaaaatatgaagagagaggtgagatcaggtctttcgaatcctctaagttcccctaa 30785033  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 21279623 - 21279711
Alignment:
Q  40 cgttattaaatatgatgtgtaaagtttatttttagtttgcc-ctaggcagtagatttggtttgattgcataaaaattaatgacagaaaataa 130  Q
    |||||||||||| ||||||||||  ||||||||| |||||| |||||||||||| |||||| ||||||||||||| ||| ||||||||||||    
T  21279623 cgttattaaataggatgtgtaaaagttattttta-tttgccactaggcagtaga-ttggttggattgcataaaaa-taacgacagaaaataa 21279711  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 17931206 - 17931159
Alignment:
Q  81 ctaggcagtagatttggtttgattgcataaaaattaatgacagaaaataa 130  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  17931206 ctaggcagttgatt-ggtttgattgcataaaaa-taatgacagaaaataa 17931159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 21915418 - 21915240
Alignment:
Q  9 gagggccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggtttgattgcat 108  Q
    |||| ||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||| ||| ||  ||||| ||||||||| ||||  |||  |||||    
T  21915418 gaggaccgtgttaatctcaagtaagcaataacgttatgaaataggatgtgtaaagttta-tttcag--tgcccgaggcagtaggtttg--ttg--tgcat 21915326  T
Q  109 aaaaa-ttaatgacagaaaata--attgatt--aaaaaatatagagagatgataccaggtcttttgaatcctctgagttcccctaa 189  Q
    ||||| | ||| | ||||||||  |||||||  |||| ||| |||||||||  || |||||||| ||||||| |||||||||||||    
T  21915325 aaaaagtaaataatagaaaataagattgattggaaaagatagagagagatgtgactaggtctttcgaatcctttgagttcccctaa 21915240  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 30926790 - 30926650
Alignment:
Q  44 attaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggtttgattgcataaaaatt--aatgacagaaaataa----ttgatta 137  Q
    |||||||| ||||||||||  |||||||  |||||||||||||| |||||||| ||||||||||||||| ||  ||| | ||||| |||    |||||||    
T  30926790 attaaataggatgtgtaaaagttatttt--gtttgccctaggcactagatttgatttgattgcataaaattttaaataatagaaagtaaagatttgatta 30926693  T
Q  138 aaaaatat--agagagatgataccaggtcttttgaatcctctg 178  Q
     |||||||  |||||||||| | ||||||||| ||||||||||    
T  30926692 gaaaatatagagagagatgaaatcaggtctttcgaatcctctg 30926650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 25138816 - 25138872
Alignment:
Q  74 gtttgccctaggcagtagatttggtttgattgcataaaaattaatgacagaaaataa 130  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||| ||| |||||||    
T  25138816 gtttgccctaggcagtagatttgatttgattgcataaaattaaataacataaaataa 25138872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 10099 - 10057
Alignment:
Q  147 gagagatgataccaggtcttttgaatcctctgagttcccctaa 189  Q
    ||||||||| || | ||||||||||||||||||||||||||||    
T  10099 gagagatgagactatgtcttttgaatcctctgagttcccctaa 10057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1755 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1755
Description:

Target: scaffold1755; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 377 - 320
Alignment:
Q  74 gtttgccctaggcagtagatttggtttgattgcataaaaattaatgacagaaaataat 131  Q
    |||| |||||||||||||||| | ||||||||||||||| | ||| ||| ||||||||    
T  377 gttttccctaggcagtagattggttttgattgcataaaattaaataacataaaataat 320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 435 - 338
Alignment:
Q  1 gttcccacgagggccgtgttaatctcaagtaaacaatagcgttattaaatatgatgtgtaaagtttatttttagtttgccctaggcagtagatttggttt 100  Q
    |||||||||||| | ||||||||||||| | | ||||| ||||| ||  || |||||||||| ||   |||||||| |||||||||||||| ||||||||    
T  435 gttcccacgaggactgtgttaatctcaatttagcaataacgttaatatctaggatgtgtaaatttc--ttttagtt-gccctaggcagtagttttggttt 339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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