View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_131 (Length: 235)
Name: NF20262_low_131
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_131 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 27545227 - 27545023
Alignment:
| Q |
14 |
tcgagagaataacgatcgcagtcacgtcaacgtgacgccttaccacacatgcatgtccgcactctagtcacataggacgcataaaagcatgtgactattg |
113 |
Q |
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| T |
27545227 |
tcgagagaataacgatcacagtcacgtcaacatgacgccttaccacacaggcatgtccgcactctagtcacataggatgcataaaagcatgtgactattg |
27545128 |
T |
|
| Q |
114 |
caatcacacaccatcaagaagacgcagtacgcatagtcctgcaaattcatatattaacaggatgcataaacaaatgaaaatgaccaaagccaggatagac |
213 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27545127 |
caatcacacaccatcaagaagacgtaggacgcatagtcctgcaaattcatatattaacgggatgcataaacaaatgaaaatgaccaaagccaggatagac |
27545028 |
T |
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| Q |
214 |
gaata |
218 |
Q |
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||||| |
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| T |
27545027 |
gaata |
27545023 |
T |
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