View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_132 (Length: 234)
Name: NF20262_low_132
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_132 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 33755970 - 33756185
Alignment:
| Q |
9 |
gctcgttcactggatcatagcctctaacagtttcgtttgagtcattttctttctctgaattagtcctatttgttgagtctatatggatagatgcatcaca |
108 |
Q |
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| T |
33755970 |
gctcgtccattggatcatagcctctaacagtttcgtttgcgtcattttctttctctgaattagtcctattttttgagtctatgtggatagatgcatcaca |
33756069 |
T |
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| Q |
109 |
gcctctacacattgatggaaatgtatgtcatcgatacaaataaacttttgaataaaaactatcgaaaaattaattcaaaacaattttttaatagatccta |
208 |
Q |
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| T |
33756070 |
gcctctacacattgatggaaatgtatgtcatcgatacaaataaacttttgaataaaaactatcgaaaaattaaatcaaaacaattttttaatagatccta |
33756169 |
T |
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| Q |
209 |
atcttcttatgcctct |
224 |
Q |
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|||||||||||||||| |
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| T |
33756170 |
atcttcttatgcctct |
33756185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 33761958 - 33762157
Alignment:
| Q |
21 |
gatcatagcctctaacagtttcgtttgagtcattttctttctctgaattagtcctatttgttgagtctatatggatagatgcatcacagcctctacacat |
120 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||| || || |||||||||||| |||| | | |||||||||||| || |||||||| |
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| T |
33761958 |
gatcatagcctctaacagtttcgtttgcgtcattttatttctctgatttcgtgctatttgttgag-ctatgagaagagatgcatcacaacccctacacat |
33762056 |
T |
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| Q |
121 |
tgatggaaatgtatgtcatcgatacaaataaacttttgaataaaaactatcgaaaaattaattcaaaacaattttttaatagatcctaatcttcttatgc |
220 |
Q |
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| T |
33762057 |
tgatggaaatgtatgttatcgatacaaataaacttttgaataaaaactatcg-aaaattaaatcaaaacaattttttaatagatcccaatcttcttatgc |
33762155 |
T |
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