View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_low_133 (Length: 233)

Name: NF20262_low_133
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_low_133
NF20262_low_133
[»] chr3 (1 HSPs)
chr3 (1-210)||(41080540-41080748)
[»] scaffold1268 (1 HSPs)
scaffold1268 (170-210)||(989-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (170-210)||(989-1029)
[»] chr8 (2 HSPs)
chr8 (170-210)||(37038479-37038519)
chr8 (170-210)||(4854923-4854963)
[»] chr4 (2 HSPs)
chr4 (170-210)||(50526231-50526271)
chr4 (170-210)||(50052488-50052528)
[»] chr1 (2 HSPs)
chr1 (170-210)||(51898743-51898783)
chr1 (170-207)||(37649198-37649235)
[»] chr7 (1 HSPs)
chr7 (170-210)||(3434562-3434602)
[»] chr5 (1 HSPs)
chr5 (170-210)||(2740274-2740314)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 41080540 - 41080748
Alignment:
Q  1 cttattcggactcatacgtctgtttaacttcacataactatttgcagtgtggaaagaaaagaagttacccttcacaaatggatgcagattctttatgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41080540 cttattcggactcatacgtctgtttaacttcacataactatttgcagtgtggaaagaaaagaagttacccttcacaaatggatgcagattctttacgttt 41080639  T
Q  101 gaagaagttgaagggaaatttcttattaggtattattatgatatgccaactttgtgtgactttaacaacgagtaatgatacatggacatctttaggtggc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||| |||||| ||| || ||    
T  41080640 gaagaagttgaagggaaatttcttattaggtattattatgatataccaactctctatgactttaacaacgagtaatgatacatagacatcctta-gtagc 41080738  T
Q  201 aaaacaccct 210  Q
    ||||||||||    
T  41080739 aaaacaccct 41080748  T

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Target: scaffold1268 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 1029 - 989
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccct 210  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacaccct 989  T

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Target: scaffold1267 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 1029 - 989
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccct 210  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacaccct 989  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 37038479 - 37038519
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccct 210  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  37038479 gagtaatgatacatagacatctttaggtggcaatacaccct 37038519  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 4854963 - 4854923
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccct 210  Q
    |||||||||||||| |||||| ||||||||||| |||||||    
T  4854963 gagtaatgatacatagacatccttaggtggcaatacaccct 4854923  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 50526271 - 50526231
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccct 210  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  50526271 gagtaatgatacatagacatctttaggtggcaatacaccct 50526231  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 50052528 - 50052488
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccct 210  Q
    |||||||||||||| |||||| ||||||||||| |||||||    
T  50052528 gagtaatgatacatagacatccttaggtggcaatacaccct 50052488  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 51898783 - 51898743
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccct 210  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  51898783 gagtaatgatacatagacatctttaggtggcaatacaccct 51898743  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 37649198 - 37649235
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacac 207  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  37649198 gagtaatgatacatagacatctttaggtggcaatacac 37649235  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 3434562 - 3434602
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccct 210  Q
    |||||||||||||| |||||| ||||||||||| |||||||    
T  3434562 gagtaatgatacatagacatccttaggtggcaatacaccct 3434602  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 2740274 - 2740314
Alignment:
Q  170 gagtaatgatacatggacatctttaggtggcaaaacaccct 210  Q
    |||||||||||||| |||||| ||||||||||| |||||||    
T  2740274 gagtaatgatacatagacatccttaggtggcaatacaccct 2740314  T

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