View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_138 (Length: 221)
Name: NF20262_low_138
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_138 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25086163 - 25085943
Alignment:
| Q |
1 |
tttcctttatactagagtgtttatttgtgttgttggttcatccatttttcaatacaatgatattatggtgaaggttggggagcaataaagaaggttcttc |
100 |
Q |
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| T |
25086163 |
tttcctttatactagagtgttgatttgtgctgttggttcatccattgttcaatacaatgatattatggtgaaggttggggagcaataaagaaggttcttc |
25086064 |
T |
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| Q |
101 |
cattgcagagttgcggagcaataacgaggcctaaatttgtactgtttggttcatcaattgttcaatacagttactatgaaggttggggagctactctttc |
200 |
Q |
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| T |
25086063 |
cattgcagagttggggagcaacaacgaggcctaaatttgtgttgtttggttcatcaattgttcaatacagttactatgaaggttggggagctacactttc |
25085964 |
T |
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| Q |
201 |
tcacttgtatgctcgtaaggt |
221 |
Q |
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| T |
25085963 |
tcacttgtacgctcgtaaggt |
25085943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 25064696 - 25064510
Alignment:
| Q |
35 |
ggttcatccatttttcaatacaatgatattatggtgaaggttggggagcaataaagaaggttcttccattgcagagttgcggagcaataacgaggcctaa |
134 |
Q |
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| T |
25064696 |
ggttcttccatcgttcaatacaatcatattatggtgaaggttggggagcaataaagaaggttcttccattgcacagttggggagcaacaatgaggcctaa |
25064597 |
T |
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| Q |
135 |
atttgtactgtttggttcatcaattgttcaatacagttactatgaaggttggggagctactctttctcacttgtatgctcgtaaggt |
221 |
Q |
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| T |
25064596 |
atttgtgttgtttggttcatcaattgttcaatacagttactatgaaggttggggagctacactttctcacttgtacgctcgtaaggt |
25064510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 25074391 - 25074296
Alignment:
| Q |
126 |
gaggcctaaatttgtactgtttggttcatcaattgttcaatacagttactatgaaggttggggagctactctttctcacttgtatgctcgtaaggt |
221 |
Q |
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| T |
25074391 |
gaggcctaaatttgtgttgtttggttcttcaattgttcaatacagttactatgaaggttggggagctactctttctcacttgtatgctcgcaaggt |
25074296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 25091925 - 25091830
Alignment:
| Q |
126 |
gaggcctaaatttgtactgtttggttcatcaattgttcaatacagttactatgaaggttggggagctactctttctcacttgtatgctcgtaaggt |
221 |
Q |
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| T |
25091925 |
gaggcctaaatttgtgttgtttggttcttcaattgttcaacacagttactatcaaggttggggagctactcttactcacttgtatgctcgtaaggt |
25091830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 25060891 - 25060793
Alignment:
| Q |
126 |
gaggcctaaatttgtactgtttggttcatcaattgttcaatacagttacta---tgaaggttggggagctactctttctcacttgtatgctcgtaaggt |
221 |
Q |
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| T |
25060891 |
gaggcctaaatttgtgttgtttggttcttccattgttcaatacaatcattatggtgaaggttggggagctactcttgctcatttgtacggtcgtaaggt |
25060793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 25060882 - 25060823
Alignment:
| Q |
23 |
atttgtgttgtt-ggttcatccatttttcaatacaatgatattatggtgaaggttggggagc |
83 |
Q |
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| T |
25060882 |
atttgtgttgtttggttcttccattgttcaatacaatcat--tatggtgaaggttggggagc |
25060823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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