View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_low_14 (Length: 628)

Name: NF20262_low_14
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_low_14
NF20262_low_14
[»] chr8 (23 HSPs)
chr8 (168-616)||(11745555-11746014)
chr8 (1-134)||(11745388-11745521)
chr8 (266-324)||(30277257-30277315)
chr8 (266-327)||(30389096-30389157)
chr8 (270-327)||(31862490-31862547)
chr8 (270-318)||(20672756-20672804)
chr8 (273-312)||(25872438-25872477)
chr8 (266-324)||(8060669-8060727)
chr8 (272-326)||(27028829-27028883)
chr8 (270-327)||(8062326-8062383)
chr8 (266-326)||(4558796-4558856)
chr8 (270-330)||(11183539-11183599)
chr8 (277-324)||(10075574-10075621)
chr8 (270-324)||(1930035-1930089)
chr8 (266-324)||(11569469-11569527)
chr8 (266-307)||(23996639-23996680)
chr8 (266-327)||(28769351-28769412)
chr8 (270-327)||(31705082-31705139)
chr8 (270-327)||(43504748-43504805)
chr8 (266-327)||(12132830-12132893)
chr8 (267-339)||(31804467-31804539)
chr8 (270-326)||(37353265-37353321)
chr8 (264-304)||(41606913-41606953)
[»] chr7 (19 HSPs)
chr7 (4-122)||(28947244-28947359)
chr7 (270-323)||(7521273-7521326)
chr7 (266-327)||(20553100-20553161)
chr7 (266-325)||(514766-514825)
chr7 (379-446)||(12242123-12242190)
chr7 (272-327)||(21453291-21453346)
chr7 (288-327)||(28340878-28340917)
chr7 (275-325)||(23721505-23721555)
chr7 (266-324)||(24363613-24363671)
chr7 (269-327)||(40530424-40530482)
chr7 (266-324)||(44821959-44822017)
chr7 (275-324)||(6601367-6601416)
chr7 (270-327)||(38010711-38010768)
chr7 (269-326)||(46281155-46281212)
chr7 (266-330)||(4966150-4966214)
chr7 (270-326)||(5369708-5369763)
chr7 (266-318)||(7244686-7244738)
chr7 (266-322)||(9423606-9423662)
chr7 (266-318)||(27378840-27378892)
[»] chr1 (19 HSPs)
chr1 (267-326)||(25479579-25479638)
chr1 (267-327)||(4700079-4700139)
chr1 (266-324)||(27140478-27140536)
chr1 (276-342)||(44422681-44422747)
chr1 (266-327)||(3224420-3224481)
chr1 (266-323)||(10199420-10199477)
chr1 (266-327)||(23902079-23902140)
chr1 (266-327)||(34290233-34290294)
chr1 (266-331)||(35351032-35351097)
chr1 (266-318)||(12641718-12641770)
chr1 (266-325)||(7137010-7137069)
chr1 (270-325)||(7472310-7472365)
chr1 (266-324)||(15558217-15558275)
chr1 (266-315)||(6279408-6279457)
chr1 (266-327)||(6659511-6659572)
chr1 (266-322)||(3223670-3223725)
chr1 (272-324)||(13975647-13975699)
chr1 (266-306)||(15361058-15361098)
chr1 (266-327)||(28689464-28689527)
[»] scaffold0024 (1 HSPs)
scaffold0024 (379-446)||(27455-27522)
[»] chr6 (10 HSPs)
chr6 (266-327)||(281860-281921)
chr6 (267-327)||(31671087-31671147)
chr6 (287-327)||(3525145-3525185)
chr6 (266-341)||(7446343-7446418)
chr6 (270-324)||(6647387-6647441)
chr6 (266-324)||(32386118-32386176)
chr6 (266-327)||(4006711-4006772)
chr6 (270-327)||(9093572-9093629)
chr6 (270-326)||(835265-835321)
chr6 (272-340)||(1275133-1275201)
[»] chr2 (13 HSPs)
chr2 (270-342)||(13736309-13736381)
chr2 (379-445)||(4550657-4550723)
chr2 (279-325)||(10884546-10884592)
chr2 (272-325)||(9174814-9174867)
chr2 (266-317)||(35379028-35379079)
chr2 (269-327)||(36236457-36236513)
chr2 (266-327)||(7103494-7103556)
chr2 (273-327)||(9556236-9556290)
chr2 (266-324)||(11488277-11488335)
chr2 (266-323)||(3078652-3078709)
chr2 (270-327)||(22681201-22681258)
chr2 (266-327)||(42621387-42621448)
chr2 (266-342)||(40158700-40158776)
[»] chr5 (23 HSPs)
chr5 (266-324)||(3237093-3237151)
chr5 (270-324)||(3947572-3947626)
chr5 (272-326)||(6593297-6593351)
chr5 (266-324)||(41957463-41957521)
chr5 (266-327)||(16889732-16889793)
chr5 (267-324)||(18543210-18543266)
chr5 (379-444)||(39257510-39257575)
chr5 (379-443)||(26516180-26516244)
chr5 (299-330)||(3951609-3951640)
chr5 (266-325)||(38104869-38104927)
chr5 (266-324)||(7907881-7907939)
chr5 (270-324)||(11615501-11615555)
chr5 (266-324)||(11707055-11707113)
chr5 (270-323)||(4014440-4014493)
chr5 (266-327)||(10272443-10272504)
chr5 (266-327)||(12425568-12425629)
chr5 (270-323)||(17258899-17258952)
chr5 (266-327)||(32194091-32194152)
chr5 (272-321)||(36638750-36638799)
chr5 (273-318)||(36774726-36774771)
chr5 (266-339)||(39594792-39594865)
chr5 (266-350)||(12975321-12975404)
chr5 (270-342)||(14295488-14295560)
[»] chr3 (11 HSPs)
chr3 (266-324)||(1217812-1217870)
chr3 (269-326)||(20502083-20502140)
chr3 (268-325)||(34924552-34924609)
chr3 (266-326)||(38462279-38462339)
chr3 (270-327)||(24887299-24887356)
chr3 (379-424)||(28842981-28843026)
chr3 (272-324)||(4013497-4013549)
chr3 (270-310)||(6483815-6483855)
chr3 (266-310)||(24785275-24785319)
chr3 (382-446)||(27294235-27294299)
chr3 (266-310)||(33883762-33883806)
[»] chr4 (15 HSPs)
chr4 (266-327)||(7694022-7694083)
chr4 (270-327)||(29601024-29601081)
chr4 (270-326)||(6978978-6979034)
chr4 (266-325)||(46859929-46859988)
chr4 (270-348)||(30207587-30207665)
chr4 (297-327)||(32066453-32066483)
chr4 (271-317)||(39063664-39063710)
chr4 (266-324)||(53673670-53673728)
chr4 (266-327)||(8468945-8469006)
chr4 (266-327)||(16494817-16494878)
chr4 (266-323)||(17975381-17975438)
chr4 (269-350)||(24929467-24929548)
chr4 (271-324)||(47800623-47800676)
chr4 (272-316)||(32421277-32421321)
chr4 (272-324)||(52259631-52259683)
[»] scaffold0003 (1 HSPs)
scaffold0003 (270-317)||(306333-306380)


Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 168 - 616
Target Start/End: Original strand, 11745555 - 11746014
Alignment:
Q  168 ccctccttatgtgtttaggaagaaatataaggctatgtttggatgagcttgttctagtgatataagcacttgtgaaactgttaaataaaatttattaaaa 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11745555 ccctccttatgtgtttaggaagaaatataaggctatgtttggatgagcttgttctagtgatataagcacttgtgaaactgttaaataaaatttattaaaa 11745654  T
Q  268 -----------gttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatgggaaaacagttagattttaatnnnn 356  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  11745655 caggtttataagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatgggaaaacagttagattttaataaaa 11745754  T
Q  357 nnnnttctatgaaaataacataatacataagcacttacacgataagagcttatgatataagtggttaagtaagatgtttatccaaacaggtcataagtgt 456  Q
        ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11745755 aaaattctatgaaaataacataatacataagcacttacatgataagagcttatgatataagtggttaagtaagatgtttatccaaacaggtcataagtgt 11745854  T
Q  457 gnnnnnnnnaacctaacatttcattggcataaatcataaatttgtgtttcttaaatatgttttttatgaaataggctgtgtgcttgttaaacaaatgtgt 556  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11745855 gttttttttaacctaacatttcattggcataaatcataaatttgtgtttcttaaatatgttttttatgaaataggctgtgtgcttgttaaacaaatgtgt 11745954  T
Q  557 ttggttgattttttgtgacccttttattggtttgtactttttacctaacaagttattatt 616  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11745955 ttggttgattttttgtgacccttttattggcttgtactttttacctaacaagttattatt 11746014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 11745388 - 11745521
Alignment:
Q  1 agaacaccttgttgtgataacaaaatggggttgaagaaaggtccttggactagtgaagaagatgaagttcttgttaattttatcaagaaaaatggtggtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11745388 agaacaccttgttgtgataacaaaatggggttgaagaaaggtccttggactagtgaagaagatgaagttcttgttaattttatcaagaaaaatggtggtc 11745487  T
Q  101 atggaagctggcgttctcttcctaagttagcagg 134  Q
    ||||||||||||||||||||||||||||||||||    
T  11745488 atggaagctggcgttctcttcctaagttagcagg 11745521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 30277257 - 30277315
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||||||||| || ||||| ||| |||||||||||||| |||||||||||||    
T  30277257 aagttgttttcagcttatttccataaactctctaggatagcttatgaaaacagcttata 30277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 30389157 - 30389096
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||||||| ||||||||| || |||||| ||||||| |||||||| |||||||    
T  30389157 aagttgttttcagcttattttcataagttctctaggaaagcttatgaaaacagcgtatagct 30389096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 31862547 - 31862490
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||| |||||||||||| |||||||| ||||| |||||| |||||||||    
T  31862547 tgttttcagcttattttcataagctctctaggataacttatgaaaacatcttatagct 31862490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 20672804 - 20672756
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacag 318  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  20672804 tgttttcagcttattttcataagctctccaggatagcttataaaaacag 20672756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 25872438 - 25872477
Alignment:
Q  273 tttcagcttagtttcataagctcactaggatagcttataa 312  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  25872438 tttcagcttattttcataagctcactaggatagcttataa 25872477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 8060727 - 8060669
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||| ||||||||||| || ||||||||| ||||||| |||||| |||||||||||||    
T  8060727 aagttattttcagcttatttccataagctctctaggattgcttatgaaaacagcttata 8060669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 27028883 - 27028829
Alignment:
Q  272 ttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagc 326  Q
    ||||||||||| |||||||||||| | | |||||||||| |||||||||||||||    
T  27028883 ttttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagc 27028829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 8062383 - 8062326
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||| || ||||| ||| ||| |||||||||| ||||||||||||||||    
T  8062383 tgttttcagcttatttccataatctctctaagatagcttatgaaaacagcttatagct 8062326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 4558856 - 4558796
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagc 326  Q
    |||||||||| || ||| || ||||||||| ||||||||||||||  ||||||||||||||    
T  4558856 aagttgtttttagtttatttccataagctctctaggatagcttatggaaacagcttatagc 4558796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 11183599 - 11183539
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaat 330  Q
    ||||||||||||| || ||||||||| | ||| |||||| | |||||||||||||||||||    
T  11183599 tgttttcagcttatttccataagctctccagggtagcttgtgaaaacagcttatagctaat 11183539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 10075574 - 10075621
Alignment:
Q  277 agcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    |||||| |||||||||||| |||||||||||||| |||| ||||||||    
T  10075574 agcttattttcataagctctctaggatagcttatgaaaatagcttata 10075621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 1930089 - 1930035
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||||| ||||| ||| |||| | |||||||||| |||||||||||||    
T  1930089 tgttttcagcttattttcacaaggtcaccaagatagcttatgaaaacagcttata 1930035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 11569469 - 11569527
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||||||||| ||||| || ||| | | |||||||||| |||||||||||||    
T  11569469 aagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaacagcttata 11569527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 23996639 - 23996680
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagct 307  Q
    |||||||||| |||||| |||||||||||| |||||||||||    
T  23996639 aagttgtttttagcttattttcataagctctctaggatagct 23996680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 28769351 - 28769412
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||||||| || ||||| ||| | |  ||||||||| ||||||||||||||||    
T  28769351 aagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttatagct 28769412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 31705139 - 31705082
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||| || ||||| ||| | |||| ||||||| ||||||||||||||||    
T  31705139 tgttttcagcttatttccataaactctcaaggacagcttatgaaaacagcttatagct 31705082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 43504805 - 43504748
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||| || |||||| || | | ||||||||||||||||| |||||||||    
T  43504805 tgttttcagcttatttccataagttctccaagatagcttataaaaacatcttatagct 43504748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 12132893 - 12132830
Alignment:
Q  266 aagttgttttcagcttagtttcataagctc--actaggatagcttataaaaacagcttatagct 327  Q
    |||||||||||| |||| |||||||||||   || |||||| ||||| ||||||||||||||||    
T  12132893 aagttgttttcaacttattttcataagcttgaaccaggataacttatgaaaacagcttatagct 12132830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 31804467 - 31804539
Alignment:
Q  267 agttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatgggaaaaca 339  Q
    |||||||||||||||  |||||||||||| | | ||||||| || ||||| ||||||| || || ||||||||    
T  31804467 agttgttttcagcttcctttcataagctctcaaagatagctcatgaaaactgcttataacttataggaaaaca 31804539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 37353265 - 37353321
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagc 326  Q
    ||||||||| ||| |||||||||||| | | |||||||||  |||||||||||||||    
T  37353265 tgttttcagattattttcataagctctcaaagatagcttaagaaaacagcttatagc 37353321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 41606913 - 41606953
Alignment:
Q  264 aaaagttgttttcagcttagtttcataagctcactaggata 304  Q
    ||||||||||||||||||| || ||||||||| ||||||||    
T  41606913 aaaagttgttttcagcttatttccataagctctctaggata 41606953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 28947359 - 28947244
Alignment:
Q  4 acaccttgttgtgataacaaaatggggttgaagaaaggtccttggactagtgaagaagatgaagttcttgttaattttatcaagaaaaatggtggtcatg 103  Q
    ||||||||||||||||| ||   ||| ||||||||||| |||||||||  |||||| |||||| |||||| ||| | ||| ||||| |||||||||||||    
T  28947359 acaccttgttgtgataagaa---gggtttgaagaaaggaccttggactgctgaagaggatgaaattcttgctaactatattaagaagaatggtggtcatg 28947263  T
Q  104 gaagctggcgttctcttcc 122  Q
    |||||||||||||||||||    
T  28947262 gaagctggcgttctcttcc 28947244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 7521326 - 7521273
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttat 323  Q
    ||||||||||||| ||||| |||||| ||||||||| |||| ||||||||||||    
T  7521326 tgttttcagcttattttcagaagctctctaggatagtttattaaaacagcttat 7521273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 20553161 - 20553100
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||| ||| || |||||||||||||||||| ||| | |||||| |||||||||    
T  20553161 aagttgttttcagattatttccataagctcactaggataacttgtgaaaacaacttatagct 20553100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 514825 - 514766
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatag 325  Q
    ||||| ||||||||||| ||| | |||||| | |||||||||||| ||||||||||||||    
T  514825 aagttattttcagcttattttgacaagctctccaggatagcttatgaaaacagcttatag 514766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 446
Target Start/End: Complemental strand, 12242190 - 12242123
Alignment:
Q  379 atacataagcacttacacgataagagcttatgatataagtggttaagtaagatgtttatccaaacagg 446  Q
    |||||||| ||||| || |||||||||||||| |||||||| |||| | || ||||||||||| ||||    
T  12242190 atacataaacacttccatgataagagcttatgctataagtgtttaattgagttgtttatccaagcagg 12242123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 21453346 - 21453291
Alignment:
Q  272 ttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    |||||||||||  ||||| ||||| |||||||||||||| ||||||| ||||||||    
T  21453346 ttttcagcttatcttcattagctctctaggatagcttatgaaaacagtttatagct 21453291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 327
Target Start/End: Original strand, 28340878 - 28340917
Alignment:
Q  288 ataagctcactaggatagcttataaaaacagcttatagct 327  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  28340878 ataagctctctaggatagcttatgaaaacagcttatagct 28340917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 23721555 - 23721505
Alignment:
Q  275 tcagcttagtttcataagctcactaggatagcttataaaaacagcttatag 325  Q
    |||||||| || ||||||| ||| ||||||||||||||||||| |||||||    
T  23721555 tcagcttatttccataagcgcacaaggatagcttataaaaacaacttatag 23721505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 24363613 - 24363671
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||||||||| || ||||| ||| | |||||||||||| |||||| ||||||    
T  24363613 aagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaacttata 24363671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 40530424 - 40530482
Alignment:
Q  269 ttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||| |||| ||||||||| ||  ||||||||||||| |||||| |||||||||    
T  40530424 ttgttttcaacttattttcataagttctttaggatagcttattaaaacaacttatagct 40530482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 44822017 - 44821959
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    |||||||||||| |||| ||||||||| || | || ||||||||| |||||||||||||    
T  44822017 aagttgttttcaacttattttcataagttctccagaatagcttatgaaaacagcttata 44821959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 6601416 - 6601367
Alignment:
Q  275 tcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    |||||||| |||||||||| | | || |||||||||||||||||||||||    
T  6601416 tcagcttattttcataagcactccagaatagcttataaaaacagcttata 6601367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 38010768 - 38010711
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    |||||| |||||| || |||||| || ||||||||| |||| ||||||||||||||||    
T  38010768 tgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagct 38010711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 326
Target Start/End: Original strand, 46281155 - 46281212
Alignment:
Q  269 ttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagc 326  Q
    |||||||||||||| ||  |||||| | | || |||||||||||||||||||||||||    
T  46281155 ttgttttcagcttatttatataagccctccagaatagcttataaaaacagcttatagc 46281212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 4966214 - 4966150
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaat 330  Q
    ||||||||||||| ||| || |||||||||   ||||| |||||| ||||||||||||| |||||    
T  4966214 aagttgttttcagtttatttccataagctcttcaggatggcttatgaaaacagcttatacctaat 4966150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 5369708 - 5369763
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagc 326  Q
    ||||||||||||  |||||||||| | || ||||||||||| |||||||||||||||    
T  5369708 tgttttcagctttatttcataagc-ctctgggatagcttatgaaaacagcttatagc 5369763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 7244738 - 7244686
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacag 318  Q
    ||||||||||||||||| |||||||||||| | |  ||||||||| |||||||    
T  7244738 aagttgttttcagcttattttcataagctctccaatatagcttatgaaaacag 7244686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 9423606 - 9423662
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagctta 322  Q
    ||||||||||||||||| ||  | |||||| | |||||||||||| |||||||||||    
T  9423606 aagttgttttcagcttatttcaagaagctctccaggatagcttattaaaacagctta 9423662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 27378840 - 27378892
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacag 318  Q
    ||||||||||||| ||| |||||||||||| | ||||||| |||| |||||||    
T  27378840 aagttgttttcagtttattttcataagctctccaggatagtttatgaaaacag 27378892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 25479638 - 25479579
Alignment:
Q  267 agttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagc 326  Q
    |||||||||||||||| |||||||||||| |||||||||||||| |||||| ||||||||    
T  25479638 agttgttttcagcttattttcataagctctctaggatagcttatgaaaacaacttatagc 25479579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 4700079 - 4700139
Alignment:
Q  267 agttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    |||||||||||||||| |||||||||||| | ||||||| |||||||||||| ||||||||    
T  4700079 agttgttttcagcttattttcataagctctccaggatagtttataaaaacagtttatagct 4700139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 27140536 - 27140478
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||||||||| || ||||||||| | | ||||||||||||||||||||||||    
T  27140536 aagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttata 27140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 342
Target Start/End: Complemental strand, 44422747 - 44422681
Alignment:
Q  276 cagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatgggaaaacagtt 342  Q
    ||||||| |||||||||||| | ||||||||||||||||| ||||||||||| ||  ||||||||||    
T  44422747 cagcttattttcataagctctccaggatagcttataaaaatagcttatagcttatatgaaaacagtt 44422681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 3224481 - 3224420
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    |||||||| |||||||| ||||||||| || |||| |||||||||||||||| | |||||||    
T  3224481 aagttgttctcagcttattttcataagttctctagaatagcttataaaaacaccctatagct 3224420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 10199420 - 10199477
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttat 323  Q
    ||||||||||||||||| |||||||||||| |||  ||||||||| |||| |||||||    
T  10199420 aagttgttttcagcttattttcataagctctctaaaatagcttatgaaaaaagcttat 10199477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 23902079 - 23902140
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||||||| || ||||||||| ||| |||||||| | |||||| |||||||||    
T  23902079 aagttgttttcagcttacttccataagctctctaagatagcttttgaaaacaacttatagct 23902140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 34290294 - 34290233
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||||||| ||||||||| ||   | |||||||||| ||||||||||||||||    
T  34290294 aagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatagct 34290233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 35351097 - 35351032
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatg 331  Q
    ||||||||||||||||| |||  ||||||| ||||||||| |||| || ||| |||||||||||||    
T  35351097 aagttgttttcagcttatttttgtaagctctctaggatagtttatgaagacaacttatagctaatg 35351032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 12641770 - 12641718
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacag 318  Q
    |||||||||||| |||| |||||||||| | ||||||||| ||||||||||||    
T  12641770 aagttgttttcatcttattttcataagcactctaggatagattataaaaacag 12641718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 7137010 - 7137069
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatag 325  Q
    ||||| ||||||||||| ||||||||| || | | |||||||||| ||||||||||||||    
T  7137010 aagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttatag 7137069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 7472365 - 7472310
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatag 325  Q
    ||||||||||||| |||||||||||| | | ||||||||||  |||||||||||||    
T  7472365 tgttttcagcttattttcataagctctccaagatagcttatggaaacagcttatag 7472310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 15558275 - 15558217
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||||||||| ||  ||||| || |||||||| ||||| |||||||||||||    
T  15558275 aagttgttttcagcttatttctataagttctctaggatatcttatgaaaacagcttata 15558217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 6279457 - 6279408
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaa 315  Q
    |||||||||||||| || || ||||||||| |||||||||||||| ||||    
T  6279457 aagttgttttcagcgtatttccataagctctctaggatagcttatgaaaa 6279408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 6659572 - 6659511
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||||||| ||  |||||||| || || |||||||| |||||| |||||||||    
T  6659572 aagttgttttcagcttatttcgataagctctcttggttagcttatgaaaacatcttatagct 6659511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 3223725 - 3223670
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagctta 322  Q
    ||||||||||||||||| |||||||||||| |||||||| ||||  |||||| ||||    
T  3223725 aagttgttttcagctta-tttcataagctcgctaggataacttacgaaaacaactta 3223670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 13975699 - 13975647
Alignment:
Q  272 ttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||| ||||| |||||| |||||| |||| || |||||||||||||    
T  13975699 ttttcagcttattttcacaagctctctaggacagctaatgaaaacagcttata 13975647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 15361098 - 15361058
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagc 306  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  15361098 aagttgttttcagcttattttcataagctctccaggatagc 15361058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 28689464 - 28689527
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttata--aaaacagcttatagct 327  Q
    ||||||||||||||||| |||||||||||  | | |||||||||||  |||||| |||||||||    
T  28689464 aagttgttttcagcttattttcataagctttccaagatagcttatatgaaaacaacttatagct 28689527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 446
Target Start/End: Complemental strand, 27522 - 27455
Alignment:
Q  379 atacataagcacttacacgataagagcttatgatataagtggttaagtaagatgtttatccaaacagg 446  Q
    ||||||||||||||||| |||||||||||||| |||||| | |||  |||| ||||||||||||||||    
T  27522 atacataagcacttacatgataagagcttatgctataagcgtttatttaagttgtttatccaaacagg 27455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 281860 - 281921
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||||||| || ||| ||||| |||||||||||||| || |||||||||||||    
T  281860 aagttgttttcagcttatttccatgagctctctaggatagcttatgaacacagcttatagct 281921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 31671087 - 31671147
Alignment:
Q  267 agttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    |||||||||||||||| |||||||||||  ||||||||| |||  ||||||||||||||||    
T  31671087 agttgttttcagcttattttcataagctatctaggatagtttacgaaaacagcttatagct 31671147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 3525185 - 3525145
Alignment:
Q  287 cataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  3525185 cataagctctctaggatagcatataaaaacagcttatagct 3525145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 7446343 - 7446418
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatgggaaaacagt 341  Q
    ||||||||||||| ||| |||||||||| | ||  |||||||||| |||||||||||| ||| ||  |||||||||    
T  7446343 aagttgttttcaggttattttcataagccccctgagatagcttatgaaaacagcttatggcttatatgaaaacagt 7446418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 6647441 - 6647387
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    |||||||| |||| |||||||||||| ||| |||||||||| ||||||| |||||    
T  6647441 tgttttcaacttattttcataagctctctaagatagcttatgaaaacagattata 6647387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 32386118 - 32386176
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||||||||| |||||||||||  | |||||| || || |||||||||||||    
T  32386118 aagttgttttcagcttactttcataagctttccaggataactaatgaaaacagcttata 32386176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 4006772 - 4006711
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||| ||||||||||| |||||||| ||| |  ||||||||||| |||||| |||||||||    
T  4006772 aagttattttcagcttattttcataacctctcagggatagcttatgaaaacaacttatagct 4006711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 9093572 - 9093629
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||| |||| |||| || ||| || ||||||| ||||||||||||||||    
T  9093572 tgttttcagcttattttcttaagttctctaagacagcttatgaaaacagcttatagct 9093629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 835265 - 835321
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagc 326  Q
    ||||||||||||| ||||||||| || | | |||||||||| ||||| |||||||||    
T  835265 tgttttcagcttattttcataagttctccaagatagcttatgaaaactgcttatagc 835321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 1275201 - 1275133
Alignment:
Q  272 ttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatgggaaaacag 340  Q
    ||||||||||| || ||||||||| | |||||| | ||| |||||||||||||||| ||  ||||||||    
T  1275201 ttttcagcttatttccataagctctccaggataacatatgaaaacagcttatagcttatatgaaaacag 1275133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 13736309 - 13736381
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatgggaaaacagtt 342  Q
    ||||||||  ||| |||||||||||| |||| ||||||||| |||||||||||||||| ||| ||||| ||||    
T  13736309 tgttttcaagttattttcataagctctctagtatagcttatgaaaacagcttatagctgatgtgaaaatagtt 13736381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 445
Target Start/End: Complemental strand, 4550723 - 4550657
Alignment:
Q  379 atacataagcacttacacgataagagcttatgatataagtggttaagtaagatgtttatccaaacag 445  Q
    |||||||||||||||   |||||||| ||||| ||||||| ||||| |||| |||||||||||||||    
T  4550723 atacataagcacttatgtgataagagattatgctataagttgttaattaagttgtttatccaaacag 4550657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 10884546 - 10884592
Alignment:
Q  279 cttagtttcataagctcactaggatagcttataaaaacagcttatag 325  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||||    
T  10884546 cttattttcataagctctctaggatagcttatgaaaacagcttatag 10884592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 9174867 - 9174814
Alignment:
Q  272 ttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatag 325  Q
    ||||||||||| ||||||||||||  || |||||||||| ||||||||||||||    
T  9174867 ttttcagcttattttcataagctctgtaagatagcttatgaaaacagcttatag 9174814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 35379028 - 35379079
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaaca 317  Q
    ||||||||||||||||| |||||||||||| | | |||||||||| ||||||    
T  35379028 aagttgttttcagcttattttcataagctctccaagatagcttatgaaaaca 35379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 36236457 - 36236513
Alignment:
Q  269 ttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    |||||||||||||| |||||||||||  | |||||||| |||||||||| |||||||||    
T  36236457 ttgttttcagcttattttcataagct--ccaggatagcatataaaaacaacttatagct 36236513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 7103494 - 7103556
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttat-aaaaacagcttatagct 327  Q
    |||||||||| |||||| ||||| || ||| ||| |||||||||| |||||||||||||||||    
T  7103494 aagttgtttttagcttattttcacaaactctctaagatagcttatgaaaaacagcttatagct 7103556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 9556290 - 9556236
Alignment:
Q  273 tttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||| |||| |||||||||||  |||||||||||||| ||||||| ||||||||    
T  9556290 tttcaacttattttcataagctttctaggatagcttatgaaaacagtttatagct 9556236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 11488335 - 11488277
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||||||||| || ||||| ||| | |||||||||||| ||| |||||||||    
T  11488335 aagttgttttcagcttatttgcataatctctccaggatagcttatgaaagcagcttata 11488277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 3078652 - 3078709
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttat 323  Q
    |||||||||| |||||| || || |||||| | | |||||||||||||||||||||||    
T  3078652 aagttgtttttagcttatttccagaagctctccaagatagcttataaaaacagcttat 3078709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 22681201 - 22681258
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    |||||| |||||| || |||||| || ||||||||| |||| ||||||||||||||||    
T  22681201 tgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagct 22681258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 42621387 - 42621448
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||||||| ||||| ||| || | || ||| ||||| ||||||||||||||||    
T  42621387 aagttgttttcagcttattttcacaagttctccagaataacttatgaaaacagcttatagct 42621448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 40158776 - 40158700
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatgggaaaacagtt 342  Q
    ||||||||||||||||| || ||||||||| | || ||| ||||| |||||| ||||| ||| ||  ||||||||||    
T  40158776 aagttgttttcagcttaattacataagctctccagaataacttatgaaaacaacttattgcttatacgaaaacagtt 40158700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 3237151 - 3237093
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||| |||||| || ||||||||||||  ||||||||||||| |||||||||||||    
T  3237151 aagttgtgttcagcatattttcataagctctttaggatagcttatgaaaacagcttata 3237093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 3947572 - 3947626
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    |||||| |||||| |||||||| ||| |||| |||||||||||||||||||||||    
T  3947572 tgtttttagcttattttcataatctcgctagaatagcttataaaaacagcttata 3947626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 6593351 - 6593297
Alignment:
Q  272 ttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagc 326  Q
    ||||||||||| |||||||||||| ||| | |||||||| |||||||||||||||    
T  6593351 ttttcagcttattttcataagctctctaaggtagcttatcaaaacagcttatagc 6593297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 41957463 - 41957521
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    |||||||||||| |||| ||||||||| || | |||||||||||| |||||||||||||    
T  41957463 aagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttata 41957521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 16889793 - 16889732
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||| ||| || ||||| ||| |||| ||||||||| ||||||||||||||||    
T  16889793 aagttgttttcagattatttccataaactctctagcatagcttatgaaaacagcttatagct 16889732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 18543210 - 18543266
Alignment:
Q  267 agttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    |||||||||||||||| |||||||||||| | |||||||||||| |||||| ||||||    
T  18543210 agttgttttcagctta-tttcataagctctccaggatagcttatgaaaacaacttata 18543266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 39257510 - 39257575
Alignment:
Q  379 atacataagcacttacacgataagagcttatgatataagtggttaagtaagatgtttatccaaaca 444  Q
    ||||||||||||||||| ||||| || ||||| |||||| | |||| |||| ||||||||||||||    
T  39257510 atacataagcacttacatgataatagtttatgctataagcgcttaattaagttgtttatccaaaca 39257575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 26516244 - 26516180
Alignment:
Q  379 atacataagcacttacacgataagagcttatgatataagtggttaagtaagatgtttatccaaac 443  Q
    ||||||||||||||| | |||||| ||||||| |||||| | |||| |||| |||||||||||||    
T  26516244 atacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaac 26516180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 330
Target Start/End: Complemental strand, 3951640 - 3951609
Alignment:
Q  299 aggatagcttataaaaacagcttatagctaat 330  Q
    ||||||||||||||||||||||||||||||||    
T  3951640 aggatagcttataaaaacagcttatagctaat 3951609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 38104869 - 38104927
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatag 325  Q
    ||||||||||||||||| || ||||||||| ||| ||||||||||  |||||||||||||    
T  38104869 aagttgttttcagcttatttccataagctctctaagatagcttat-gaaacagcttatag 38104927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 7907939 - 7907881
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||||||||| |||||||||||| | | || ||||||| |||||| ||||||    
T  7907939 aagttgttttcagcttaatttcataagctctccaagacagcttatcaaaacaacttata 7907881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 11615555 - 11615501
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||||| || ||||||||||  |||||| ||||| |||||||||||||    
T  11615555 tgttttcagcttatttccataagctcataaggatatcttatgaaaacagcttata 11615501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 11707113 - 11707055
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||||||||| ||||| ||||||   | |||||||||| |||||||||||||    
T  11707113 aagttgttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttata 11707055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 4014440 - 4014493
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttat 323  Q
    ||||||||||||| ||||||||| || | | |||||||||| ||||||||||||    
T  4014440 tgttttcagcttattttcataagttctccaagatagcttatgaaaacagcttat 4014493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 10272443 - 10272504
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||||||| |||||||| ||| | | ||| |||||| |||||| |||||||||    
T  10272443 aagttgttttcagcttattttcataaactctccaagatggcttatgaaaacaacttatagct 10272504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 12425629 - 12425568
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    |||||||||||| |||| ||||||||| || | | |||||||| | ||||||||||||||||    
T  12425629 aagttgttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatagct 12425568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 17258899 - 17258952
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttat 323  Q
    ||||||||||||| ||||||||||||   ||||||| |||| ||||||||||||    
T  17258899 tgttttcagcttattttcataagctcttcaggatagtttatgaaaacagcttat 17258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 32194091 - 32194152
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||||||| ||  |||||||| | | ||||||||| ||||||| |||||||||    
T  32194091 aagttgttttcagcttatttatataagctctcaaagatagcttaaaaaaacatcttatagct 32194152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 36638799 - 36638750
Alignment:
Q  272 ttttcagcttagtttcataagctcactaggatagcttataaaaacagctt 321  Q
    ||||||||||| || ||||||||| |||||||| ||||| ||||||||||    
T  36638799 ttttcagcttatttccataagctctctaggataacttatgaaaacagctt 36638750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 36774726 - 36774771
Alignment:
Q  273 tttcagcttagtttcataagctcactaggatagcttataaaaacag 318  Q
    |||||||||| || ||||||||| | ||||||||||||||||||||    
T  36774726 tttcagcttatttccataagctctccaggatagcttataaaaacag 36774771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 39594865 - 39594792
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatgggaaaaca 339  Q
    ||||||||||||||||| ||||||||| |||  | |||| ||||| ||||||||||| | || ||| |||||||    
T  39594865 aagttgttttcagcttattttcataagttcaacaagatatcttatgaaaacagcttacaacttatgcgaaaaca 39594792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 12975404 - 12975321
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatgggaaaacagttagatttta 350  Q
    |||||||||||| |||| || ||||||||| | | |||||||||| || ||||||||||||| ||  ||||||| || |||||||    
T  12975404 aagttgttttcaactta-ttccataagctctccaagatagcttatgaacacagcttatagcttatatgaaaacaatttgatttta 12975321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 14295560 - 14295488
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatgggaaaacagtt 342  Q
    ||||||||||||| ||  | |||||| | |||||||||||  |||||||||||||||| ||  ||||||||||    
T  14295560 tgttttcagcttacttctaaaagctctccaggatagcttacgaaaacagcttatagcttatatgaaaacagtt 14295488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 1217812 - 1217870
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    |||||||||||| |||| ||||||||| || | |||||||||||| |||||||||||||    
T  1217812 aagttgttttcatcttactttcataagttctcaaggatagcttatgaaaacagcttata 1217870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 269 - 326
Target Start/End: Original strand, 20502083 - 20502140
Alignment:
Q  269 ttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagc 326  Q
    |||||||||||||| | ||||||||||   |||||||||||| |||||||||||||||    
T  20502083 ttgttttcagcttattctcataagctcttcaggatagcttatgaaaacagcttatagc 20502140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 34924552 - 34924609
Alignment:
Q  268 gttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatag 325  Q
    ||||||||||||||| |||||||||||| ||| |||||||||| |||| |||| ||||    
T  34924552 gttgttttcagcttattttcataagctctctaagatagcttatgaaaatagctcatag 34924609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 38462339 - 38462279
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagc 326  Q
    ||||||||||||||||| || ||||||||  || ||||||||||| ||||||| |||||||    
T  38462339 aagttgttttcagcttatttccataagctatcttggatagcttatgaaaacagtttatagc 38462279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 24887299 - 24887356
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||| |  ||||||||| | |||||||||||| |||||||||| |||||    
T  24887299 tgttttcagcttattcccataagctctccaggatagcttatgaaaacagcttttagct 24887356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 28842981 - 28843026
Alignment:
Q  379 atacataagcacttacacgataagagcttatgatataagtggttaa 424  Q
    ||||||||||||||| | |||||| |||||||||||||||| ||||    
T  28842981 atacataagcacttatatgataagcgcttatgatataagtgcttaa 28843026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 4013497 - 4013549
Alignment:
Q  272 ttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||| ||||| |||||| |||||| |||| || |||||||||||||    
T  4013497 ttttcagcttattttcacaagctctctaggacagctaatgaaaacagcttata 4013549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 6483855 - 6483815
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttat 310  Q
    ||||||||||||| ||| |||||||| ||||||||||||||    
T  6483855 tgttttcagcttattttaataagctctctaggatagcttat 6483815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 24785319 - 24785275
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttat 310  Q
    |||||||||| || ||| |||||||||||| ||||||||||||||    
T  24785319 aagttgtttttagtttattttcataagctccctaggatagcttat 24785275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 446
Target Start/End: Complemental strand, 27294299 - 27294235
Alignment:
Q  382 cataagcacttacacgataagagcttatgatataagtggttaagtaagatgtttatccaaacagg 446  Q
    |||||||||||| ||| |||| ||||||  |||||  |||||| |||| ||||||||||||||||    
T  27294299 cataagcacttatacgttaagtgcttatactataaacggttaattaagctgtttatccaaacagg 27294235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 33883762 - 33883806
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttat 310  Q
    ||||||||||||||||| ||||||||| || ||| ||||||||||    
T  33883762 aagttgttttcagcttattttcataagttctctaagatagcttat 33883806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 7694022 - 7694083
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||||||| || ||||| ||| | |||||| ||||| ||||||||||||||||    
T  7694022 aagttgttttcagcttatttccataaactctccaggataacttatgaaaacagcttatagct 7694083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 29601024 - 29601081
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||| ||||||||| || |||||||||| ||| ||||||| ||||||||    
T  29601024 tgttttcagcttattttcataagttctctaggatagcatatgaaaacagattatagct 29601081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 6978978 - 6979034
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagc 326  Q
    ||||||||||||| |||||||| |||  |||||| ||||||||||||| ||||||||    
T  6978978 tgttttcagcttattttcataaactctttaggatggcttataaaaacaacttatagc 6979034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 46859988 - 46859929
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatag 325  Q
    ||||||||||||||||| ||||| || ||| | | ||||| |||||||||||||||||||    
T  46859988 aagttgttttcagcttactttcaaaaactccccatgataggttataaaaacagcttatag 46859929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 30207587 - 30207665
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatgggaaaacagttagattt 348  Q
    ||||||||||||| || ||||| ||| ||| | |||||||| |||||| ||||||||| ||  |||||||||| |||||    
T  30207587 tgttttcagcttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaacagtttgattt 30207665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 327
Target Start/End: Original strand, 32066453 - 32066483
Alignment:
Q  297 ctaggatagcttataaaaacagcttatagct 327  Q
    |||||||||||||||||||||||||||||||    
T  32066453 ctaggatagcttataaaaacagcttatagct 32066483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 39063664 - 39063710
Alignment:
Q  271 gttttcagcttagtttcataagctcactaggatagcttataaaaaca 317  Q
    |||||||| ||| |||||||||||| | |||||||||||||||||||    
T  39063664 gttttcagtttattttcataagctctccaggatagcttataaaaaca 39063710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 53673670 - 53673728
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    ||||||||||||||||| || ||||||||| | | |||||||||| ||||||| |||||    
T  53673670 aagttgttttcagcttatttacataagctctccaagatagcttatgaaaacagtttata 53673728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 8469006 - 8468945
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    ||||||||||||| ||| |||||||||||| |||| ||| ||||| |||||| || ||||||    
T  8469006 aagttgttttcagattattttcataagctctctagaataacttatgaaaacaactaatagct 8468945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 16494817 - 16494878
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagct 327  Q
    |||||||||||| |||||||| | |||||| | | |||||||||| |||||| |||||||||    
T  16494817 aagttgttttcaacttagttttacaagctctccaagatagcttatgaaaacaacttatagct 16494878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 17975381 - 17975438
Alignment:
Q  266 aagttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttat 323  Q
    |||||||||| |||||| || || |||||| | | |||||||||||||||||||||||    
T  17975381 aagttgtttttagcttatttccagaagctctccaagatagcttataaaaacagcttat 17975438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 24929548 - 24929467
Alignment:
Q  269 ttgttttcagcttagtttcataagctcactaggatagcttataaaaacagcttatagctaatgggaaaacagttagatttta 350  Q
    |||||||||||||| || ||||||||| |||| | || |||| |||||| |||||||||  |  ||||||||||||| ||||    
T  24929548 ttgttttcagcttatttccataagctctctagtagagtttatgaaaacaacttatagcttttatgaaaacagttagacttta 24929467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 47800676 - 47800623
Alignment:
Q  271 gttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    |||||||||||| ||||||||||||   | |||||||||| |||||||||||||    
T  47800676 gttttcagcttattttcataagctcttcaagatagcttatgaaaacagcttata 47800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 32421277 - 32421321
Alignment:
Q  272 ttttcagcttagtttcataagctcactaggatagcttataaaaac 316  Q
    ||||||||||| |||||||| ||| ||| ||||||||||||||||    
T  32421277 ttttcagcttattttcataacctctctaagatagcttataaaaac 32421321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 52259683 - 52259631
Alignment:
Q  272 ttttcagcttagtttcataagctcactaggatagcttataaaaacagcttata 324  Q
    |||||| |||| |||||||||||| |   ||||||||||||||||||||||||    
T  52259683 ttttcaacttattttcataagctctcccagatagcttataaaaacagcttata 52259631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 306380 - 306333
Alignment:
Q  270 tgttttcagcttagtttcataagctcactaggatagcttataaaaaca 317  Q
    ||||||||||||| || ||||||||| |||||||||||||| ||||||    
T  306380 tgttttcagcttacttacataagctctctaggatagcttatgaaaaca 306333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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