View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20262_low_140 (Length: 218)
Name: NF20262_low_140
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_140 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 12267244 - 12267428
Alignment:
| Q |
20 |
aatcatatgatagtttaagattatttgatgtatatacagtat--aacataacatcctttattttgttctagataatatatggggtgttataagtgttagt |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12267244 |
aatcatatgacagtttaagattatttgatgtatatacagtatcaaacataacatcctttattttgttctagataatatatggggtgttataagtgttagt |
12267343 |
T |
|
| Q |
118 |
gtctaaaataccacacttaaaaagaaaaagactatgacctaatcaaaataatcagaaaaagccaagaatatggactagaaatatt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12267344 |
gtctaaaataccacacttaaaaagaaaaagactctgacctaatcaaaataatcagaaaaagccaagaatatggactagaaatatt |
12267428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University