View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_141 (Length: 218)
Name: NF20262_low_141
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_141 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 33277238 - 33277054
Alignment:
| Q |
15 |
atgaacgcaaaaacacattgaaaaggggaaataattcaacaattattttatacattccccaatagataaacaaatctaaatctcctaaactgtttaataa |
114 |
Q |
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| T |
33277238 |
atgaacacaaaaacacattgaaaaggggaaataattcaacaattattttatacattccccaatagataaacaaatctaaatctcctaaactgtttaataa |
33277139 |
T |
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| Q |
115 |
tttaagattacaacaataaacaaaacaaatctagttttgcctataagcaatgtaattagccaaagcaatcaaaggagcagctttat |
200 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33277138 |
tttaacattacaacaataaacaaaac-aatctagttttgcctataagcaatgtaattagccaaagcaatcaaaggagcagatttat |
33277054 |
T |
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