View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_low_16 (Length: 616)

Name: NF20262_low_16
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_low_16
NF20262_low_16
[»] scaffold0262 (3 HSPs)
scaffold0262 (173-251)||(4277-4355)
scaffold0262 (257-398)||(2882-3021)
scaffold0262 (1-42)||(4107-4148)
[»] chr8 (11 HSPs)
chr8 (173-254)||(40463499-40463580)
chr8 (257-398)||(40462394-40462535)
chr8 (257-295)||(26521893-26521931)
chr8 (173-254)||(9310817-9310898)
chr8 (257-295)||(9755808-9755846)
chr8 (257-291)||(34315067-34315101)
chr8 (349-398)||(9755888-9755937)
chr8 (176-240)||(38973843-38973908)
chr8 (176-240)||(39004941-39005006)
chr8 (1-42)||(40463331-40463372)
chr8 (177-240)||(26521899-26521963)
[»] chr3 (11 HSPs)
chr3 (173-254)||(11150350-11150431)
chr3 (257-325)||(11151455-11151523)
chr3 (255-293)||(34825707-34825745)
chr3 (257-295)||(36437338-36437376)
chr3 (349-398)||(11151382-11151431)
chr3 (173-240)||(52043319-52043386)
chr3 (257-327)||(48537984-48538054)
chr3 (176-240)||(39605671-39605736)
chr3 (349-398)||(39606426-39606475)
chr3 (349-398)||(54673436-54673485)
chr3 (176-240)||(54672721-54672785)
[»] chr4 (11 HSPs)
chr4 (173-254)||(47862011-47862092)
chr4 (257-325)||(12862575-12862643)
chr4 (257-321)||(56083478-56083542)
chr4 (257-302)||(47863566-47863611)
chr4 (257-320)||(6658622-6658685)
chr4 (257-295)||(16312771-16312809)
chr4 (173-240)||(47378625-47378692)
chr4 (349-395)||(47863464-47863510)
chr4 (349-398)||(5169528-5169577)
chr4 (349-398)||(56083570-56083619)
chr4 (257-289)||(47378629-47378661)
[»] chr1 (14 HSPs)
chr1 (173-254)||(9010952-9011033)
chr1 (173-254)||(17241998-17242079)
chr1 (173-254)||(24303010-24303091)
chr1 (261-325)||(24304172-24304236)
chr1 (257-320)||(51676203-51676266)
chr1 (257-295)||(35712577-35712615)
chr1 (173-239)||(48030131-48030197)
chr1 (176-240)||(13970041-13970105)
chr1 (349-398)||(24304098-24304148)
chr1 (257-294)||(13970072-13970109)
chr1 (349-398)||(13970785-13970834)
chr1 (1-42)||(24303219-24303260)
chr1 (349-398)||(51676134-51676183)
chr1 (255-283)||(30232653-30232681)
[»] chr7 (3 HSPs)
chr7 (173-254)||(5737255-5737336)
chr7 (261-325)||(47578471-47578535)
chr7 (184-254)||(12629334-12629405)
[»] chr2 (1 HSPs)
chr2 (257-325)||(29043484-29043552)
[»] chr5 (1 HSPs)
chr5 (257-295)||(27491167-27491205)
[»] chr6 (3 HSPs)
chr6 (261-294)||(5859026-5859059)
chr6 (177-240)||(5858990-5859054)
chr6 (201-240)||(26545789-26545829)


Alignment Details
Target: scaffold0262 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 4277 - 4355
Alignment:
Q  173 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatcttataatggcaag 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||    
T  4277 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttgggggtgtaaaccaaataatcttctaatggcaag 4355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 257 - 398
Target Start/End: Original strand, 2882 - 3021
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgtgatgatgattgaagtggcactgacatgtcaaaannnnnnnnnnnnnnnnnnnnaaaagtat 356  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| |||||| |||| ||                    ||||||||    
T  2882 tgactggattaatgagctgatgtggcatgctgactgtgcgatgatgagtgaagtggc-ctgacacgtcataatttttaaatcttttatttttaaaagtat 2980  T
Q  357 gttaaaaatctgaaacccccaaaatacccctaatgataaatt 398  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  2981 gttaaaaatctgaaa-ccccaaaatacccctaatgataaatt 3021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4107 - 4148
Alignment:
Q  1 ttgtgctggggtatgtcactggagaagaagaagagaaaatta 42  Q
    |||||||||| | |||| ||||||||||||||||||||||||    
T  4107 ttgtgctgggttctgtcgctggagaagaagaagagaaaatta 4148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 40463499 - 40463580
Alignment:
Q  173 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatcttataatggcaagggg 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| ||||||    
T  40463499 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttgggggtgtaaatcaaagaatcttctaatggtaagggg 40463580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 257 - 398
Target Start/End: Original strand, 40462394 - 40462535
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgtgatgatgattgaagtggcactgacatgtcaaaannnnnnnnnnnnnnnnnnnnaaaagtat 356  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||  ||| ||                    ||||||||    
T  40462394 tgactggattaatgagctgatgtggcacgctgactgtgcaatgatgagtgaagtggcactgacacatcataatttttaaatcttttatttttaaaagtat 40462493  T
Q  357 gttaaaaatctgaaacccccaaaatacccctaatgataaatt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40462494 gttaaaaatctgaaacccccaaaatacccctaatgataaatt 40462535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 26521931 - 26521893
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgt 295  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26521931 tgactggattaatgagctgatgtggcacgctgactgtgt 26521893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 9310817 - 9310898
Alignment:
Q  173 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatcttataatggcaagggg 254  Q
    ||||||||||||||| ||||||  ||||||||| ||| || |||| ||||||| ||||| |||||||| | |||||||||||    
T  9310817 cacatcagcgtgccacatcatctcattaatccattcatatagcttgggggtgtgaaccagagaatcttctcatggcaagggg 9310898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 9755808 - 9755846
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgt 295  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  9755808 tgactggattaatgagttgatgtagcacgctgactgtgt 9755846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 34315101 - 34315067
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgact 291  Q
    ||||||||||||| |||||||||||||||||||||    
T  34315101 tgactggattaataagctgatgtggcacgctgact 34315067  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 9755888 - 9755937
Alignment:
Q  349 aaaagtatgttaaaaatctgaaacccccaaaatacccctaatgataaatt 398  Q
    ||||||||||||||||| |||||  || ||||||||| ||||||||||||    
T  9755888 aaaagtatgttaaaaatgtgaaataccaaaaatacccttaatgataaatt 9755937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 38973908 - 38973843
Alignment:
Q  176 atcagcgtgccaaatcatcatattaatccaatcagatggcttagggg-tgtaaaccaaagaatctt 240  Q
    |||||||||||| |||||| |||||||| | ||| |||| || |||| ||||||||||||||||||    
T  38973908 atcagcgtgccacatcatcctattaatctagtcatatggtttggggggtgtaaaccaaagaatctt 38973843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 39005006 - 39004941
Alignment:
Q  176 atcagcgtgccaaatcatcatattaatccaatcagatggcttagggg-tgtaaaccaaagaatctt 240  Q
    |||||||||||| |||||| |||||||| | ||| |||| || |||| ||||||||||||||||||    
T  39005006 atcagcgtgccacatcatcctattaatctagtcatatggtttggggggtgtaaaccaaagaatctt 39004941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40463331 - 40463372
Alignment:
Q  1 ttgtgctggggtatgtcactggagaagaagaagagaaaatta 42  Q
    |||||||||| | |||| ||||||||||||||||||||||||    
T  40463331 ttgtgctgggttctgtcgctggagaagaagaagagaaaatta 40463372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 26521899 - 26521963
Alignment:
Q  177 tcagcgtgccaaatcatcatattaatccaatcagatggctt-aggggtgtaaaccaaagaatctt 240  Q
    ||||||||||| |||| |  ||||||||| ||||||| | | |||||||||||||||||||||||    
T  26521899 tcagcgtgccacatcagctcattaatccagtcagatgacatcaggggtgtaaaccaaagaatctt 26521963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 11150431 - 11150350
Alignment:
Q  173 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatcttataatggcaagggg 254  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||    
T  11150431 cacatcagcgtgccaaatcatcacattaatccaatcagatgacttgggggtgtaaaccaaggaatcttctaatggcaagggg 11150350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 11151523 - 11151455
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgtgatgatgattgaagtggcactgacatgtca 325  Q
    |||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||    
T  11151523 tgactggattcatgagctgatgtggcacgttaactgtgtgatgatgagtgaagtggcactgacacgtca 11151455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 255 - 293
Target Start/End: Original strand, 34825707 - 34825745
Alignment:
Q  255 tttgactggattaatgagctgatgtggcacgctgactgt 293  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34825707 tttgactggattaatgagctgatgtggcacgctgactgt 34825745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 36437338 - 36437376
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgt 295  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  36437338 tgactggattaatgagatgatgtggcacgctgactgtgt 36437376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 11151431 - 11151382
Alignment:
Q  349 aaaagtatgttaaaaatctgaaacccccaaaatacccctaatgataaatt 398  Q
    ||||||||||||||||| |||||  |||||||||||| ||||||||||||    
T  11151431 aaaagtatgttaaaaatgtgaaatacccaaaatacccataatgataaatt 11151382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 52043319 - 52043386
Alignment:
Q  173 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatctt 240  Q
    ||||||| ||||||| ||||||  ||| ||||| ||||||| ||| ||||||||||||||| ||||||    
T  52043319 cacatcatcgtgccacatcatctcattgatccagtcagatgacttgggggtgtaaaccaaataatctt 52043386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 48537984 - 48538054
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgtgatgatgattgaagtggcactgacatgtcaaa 327  Q
    ||||||||| |||  | |||| ||||| ||||||||||| ||||||  |||||||||||||||| ||||||    
T  48537984 tgactggataaatttgatgatttggcatgctgactgtgtaatgatggctgaagtggcactgacacgtcaaa 48538054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 39605736 - 39605671
Alignment:
Q  176 atcagcgtgccaaatcatcatattaatccaatcagatggcttagggg-tgtaaaccaaagaatctt 240  Q
    |||||||||||| ||||||  ||||||||| ||| |||| || |||| ||||||||||||||||||    
T  39605736 atcagcgtgccacatcatcccattaatccagtcatatggtttggggggtgtaaaccaaagaatctt 39605671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 39606475 - 39606426
Alignment:
Q  349 aaaagtatgttaaaaatctgaaacccccaaaatacccctaatgataaatt 398  Q
    |||| |||||||||||| |||||  || ||||||||||||||||||||||    
T  39606475 aaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataaatt 39606426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 54673485 - 54673436
Alignment:
Q  349 aaaagtatgttaaaaatctgaaacccccaaaatacccctaatgataaatt 398  Q
    |||| |||||||||||| |||||  || ||||||||||||||||||||||    
T  54673485 aaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataaatt 54673436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 54672785 - 54672721
Alignment:
Q  176 atcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatctt 240  Q
    |||||||||||| ||||||  ||||||||| ||| |||| ||  ||||||||| |||||||||||    
T  54672785 atcagcgtgccacatcatcccattaatccagtcatatggtttgagggtgtaaatcaaagaatctt 54672721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 47862092 - 47862011
Alignment:
Q  173 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatcttataatggcaagggg 254  Q
    |||||||||||||||||||| || |||||||||||||||||| || | |||||||||||||||||||| |||||||||||||    
T  47862092 cacatcagcgtgccaaatcaccacattaatccaatcagatggtttggaggtgtaaaccaaagaatcttctaatggcaagggg 47862011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 12862643 - 12862575
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgtgatgatgattgaagtggcactgacatgtca 325  Q
    |||||||||||||||||||||||||||||||||||||||  |||||  |||| ||||||||||| ||||    
T  12862643 tgactggattaatgagctgatgtggcacgctgactgtgtagtgatggatgaaatggcactgacacgtca 12862575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 56083478 - 56083542
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgtgatgatgattgaagtggcactgacat 321  Q
    |||||||||||||||| ||||||||||||||||||||||  |||||| |||||||||| ||||||    
T  56083478 tgactggattaatgagttgatgtggcacgctgactgtgtagtgatgagtgaagtggcattgacat 56083542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 47863611 - 47863566
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgtgatgatg 302  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  47863611 tgactggattaatgagctgatgtggcacgctaactgtgtgatgatg 47863566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 6658685 - 6658622
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgtgatgatgattgaagtggcactgaca 320  Q
    |||||||||||||||||||||||||||||||||||||||  |||||  |||| || ||||||||    
T  6658685 tgactggattaatgagctgatgtggcacgctgactgtgtagtgatggatgaaatgacactgaca 6658622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 16312771 - 16312809
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgt 295  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  16312771 tgactggattaatgagatgatgtggcacgctgactgtgt 16312809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 47378625 - 47378692
Alignment:
Q  173 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatctt 240  Q
    ||||||||||||||| ||||||  ||||||||| ||| || |||| ||||| | ||||||||||||||    
T  47378625 cacatcagcgtgccacatcatctcattaatccagtcatatagcttgggggtatgaaccaaagaatctt 47378692  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 47863510 - 47863464
Alignment:
Q  349 aaaagtatgttaaaaatctgaaacccccaaaatacccctaatgataa 395  Q
    ||||||||||||||||| |||||  |||||||||||||| |||||||    
T  47863510 aaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataa 47863464  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 5169528 - 5169577
Alignment:
Q  349 aaaagtatgttaaaaatctgaaacccccaaaatacccctaatgataaatt 398  Q
    |||| |||||||||||| |||||  || ||||||||||||||||||||||    
T  5169528 aaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataaatt 5169577  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 56083570 - 56083619
Alignment:
Q  349 aaaagtatgttaaaaatctgaaacccccaaaatacccctaatgataaatt 398  Q
    ||||||||||||||||| |||||  || ||||||||| ||||||||||||    
T  56083570 aaaagtatgttaaaaatgtgaaataccaaaaatacccttaatgataaatt 56083619  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 47378661 - 47378629
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctga 289  Q
    |||||||||||||||| ||||||||||||||||    
T  47378661 tgactggattaatgagatgatgtggcacgctga 47378629  T

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Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 9010952 - 9011033
Alignment:
Q  173 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatcttataatggcaagggg 254  Q
    ||||||||||||||| ||||||| ||||||||| |||||||| || |||||||||||||||||||||| |||||||||||||    
T  9010952 cacatcagcgtgccacatcatcacattaatccagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggg 9011033  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 17241998 - 17242079
Alignment:
Q  173 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatcttataatggcaagggg 254  Q
    ||||||||||||||| ||||||| ||||||| | |||||||| || |||||||||||||||||||||| |||||||||||||    
T  17241998 cacatcagcgtgccacatcatcacattaatctagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggg 17242079  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 24303091 - 24303010
Alignment:
Q  173 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatcttataatggcaagggg 254  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||  ||||||||| ||||||||||| |||| ||||||||    
T  24303091 cacatcagcgtgccaaatcatcacattaatccattcagatggcttgagggtgtaaatcaaagaatcttctaattgcaagggg 24303010  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 24304236 - 24304172
Alignment:
Q  261 tggattaatgagctgatgtggcacgctgactgtgtgatgatgattgaagtggcactgacatgtca 325  Q
    |||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  24304236 tggattaatgaattgatgtggcacgctgactgtgtgatgatgagtgaagtggcactgacacgtca 24304172  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 51676266 - 51676203
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgtgatgatgattgaagtggcactgaca 320  Q
    |||||||||||||||  ||||||||||||||||||||||  |||||| |||||||||| |||||    
T  51676266 tgactggattaatgaattgatgtggcacgctgactgtgtagtgatgagtgaagtggcaatgaca 51676203  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 35712577 - 35712615
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgt 295  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  35712577 tgactggattaatgagctgatgtgacacgctgactgtgt 35712615  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 48030131 - 48030197
Alignment:
Q  173 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatct 239  Q
    |||||||||| |||| || | | |||| ||||||||||||||| | |||||||||||||||||||||    
T  48030131 cacatcagcgcgccacataagcttatttatccaatcagatggcctgggggtgtaaaccaaagaatct 48030197  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 13970105 - 13970041
Alignment:
Q  176 atcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatctt 240  Q
    |||||||||||| ||||||  ||||||||| ||| |||| || ||||| ||||||||||||||||    
T  13970105 atcagcgtgccacatcatctcattaatccagtcatatggtttgggggtataaaccaaagaatctt 13970041  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 24304148 - 24304098
Alignment:
Q  349 aaaagtatgttaaaaatctgaaacccccaaaatacccctaa-tgataaatt 398  Q
    ||||||||||||||||| |||||  |||||||||||||||| |||||||||    
T  24304148 aaaagtatgttaaaaatgtgaaatacccaaaatacccctaattgataaatt 24304098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 13970072 - 13970109
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtg 294  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  13970072 tgactggattaatgagatgatgtggcacgctgattgtg 13970109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 13970834 - 13970785
Alignment:
Q  349 aaaagtatgttaaaaatctgaaacccccaaaatacccctaatgataaatt 398  Q
    |||| |||||||||||| |||||  || ||||||||||||||||||||||    
T  13970834 aaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataaatt 13970785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24303260 - 24303219
Alignment:
Q  1 ttgtgctggggtatgtcactggagaagaagaagagaaaatta 42  Q
    |||||||||| | |||| ||||||||||||||||||||||||    
T  24303260 ttgtgctgggttctgtcgctggagaagaagaagagaaaatta 24303219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 51676183 - 51676134
Alignment:
Q  349 aaaagtatgttaaaaatctgaaacccccaaaatacccctaatgataaatt 398  Q
    ||||||||||||||||| |||||  || ||||||||| ||||||||||||    
T  51676183 aaaagtatgttaaaaatgtgaaatacctaaaatacccttaatgataaatt 51676134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 30232681 - 30232653
Alignment:
Q  255 tttgactggattaatgagctgatgtggca 283  Q
    |||||||||||||||||||||||||||||    
T  30232681 tttgactggattaatgagctgatgtggca 30232653  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 5737336 - 5737255
Alignment:
Q  173 cacatcagcgtgccaaatcatcatattaatccaatcagatggcttaggggtgtaaaccaaagaatcttataatggcaagggg 254  Q
    ||||||||||||||| ||||||| ||||||| | |||||||| || |||||||||||||||||||||| |||||||||||||    
T  5737336 cacatcagcgtgccacatcatcacattaatctagtcagatggtttgggggtgtaaaccaaagaatcttctaatggcaagggg 5737255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 47578535 - 47578471
Alignment:
Q  261 tggattaatgagctgatgtggcacgctgactgtgtgatgatgattgaagtggcactgacatgtca 325  Q
    |||||||||||||||||||||||||||||||||||  |||||  |||| ||||| ||||| ||||    
T  47578535 tggattaatgagctgatgtggcacgctgactgtgtagtgatgggtgaaatggcaatgacacgtca 47578471  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 12629334 - 12629405
Alignment:
Q  184 gccaaatcatcatattaatccaatcagatggct-taggggtgtaaaccaaagaatcttataatggcaagggg 254  Q
    |||| ||||||  ||| ||||| |||||||||  |||||| |||||||||||||||| ||||||||||||||    
T  12629334 gccacatcatcccatttatccagtcagatggcgctaggggggtaaaccaaagaatctaataatggcaagggg 12629405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 29043552 - 29043484
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgtgatgatgattgaagtggcactgacatgtca 325  Q
    ||||||||||||||||||||||||||||||||| |||||  | |||  |||| ||||||||||| ||||    
T  29043552 tgactggattaatgagctgatgtggcacgctgattgtgtagtaatggatgaaatggcactgacacgtca 29043484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 27491205 - 27491167
Alignment:
Q  257 tgactggattaatgagctgatgtggcacgctgactgtgt 295  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  27491205 tgactggatcaatgagctgatgtggcacgctaactgtgt 27491167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 5859026 - 5859059
Alignment:
Q  261 tggattaatgagctgatgtggcacgctgactgtg 294  Q
    |||||||||||| |||||||||||||||||||||    
T  5859026 tggattaatgagatgatgtggcacgctgactgtg 5859059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 5859054 - 5858990
Alignment:
Q  177 tcagcgtgccaaatcatcatattaatccaatcagatggc-ttaggggtgtaaaccaaagaatctt 240  Q
    ||||||||||| ||||||  ||||||||||||||||| | ||||||| ||| ||||| |||||||    
T  5859054 tcagcgtgccacatcatctcattaatccaatcagatgacattaggggggtacaccaaggaatctt 5858990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 26545789 - 26545829
Alignment:
Q  201 atccaatcagatggc-ttaggggtgtaaaccaaagaatctt 240  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  26545789 atccagtcagatggccttaggggtgtaaaccaaagaatctt 26545829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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