View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_low_19 (Length: 577)

Name: NF20262_low_19
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_low_19
NF20262_low_19
[»] chr2 (12 HSPs)
chr2 (170-431)||(1551486-1551747)
chr2 (170-430)||(1895383-1895643)
chr2 (174-422)||(17281841-17282090)
chr2 (178-430)||(17375258-17375510)
chr2 (170-302)||(3921565-3921697)
chr2 (170-262)||(34660259-34660351)
chr2 (170-262)||(4869618-4869710)
chr2 (311-361)||(3921683-3921733)
chr2 (508-555)||(1551363-1551410)
chr2 (315-380)||(4869707-4869772)
chr2 (508-547)||(17281726-17281765)
chr2 (508-550)||(1895712-1895754)
[»] chr6 (5 HSPs)
chr6 (170-430)||(20740551-20740811)
chr6 (183-430)||(21881453-21881700)
chr6 (508-555)||(20740889-20740936)
chr6 (200-263)||(30845560-30845623)
chr6 (170-214)||(34213506-34213550)
[»] chr4 (12 HSPs)
chr4 (173-430)||(53202242-53202499)
chr4 (178-430)||(47518340-47518592)
chr4 (170-424)||(23054129-23054382)
chr4 (172-280)||(34227057-34227165)
chr4 (211-369)||(6410005-6410164)
chr4 (194-259)||(12469342-12469407)
chr4 (508-555)||(53202568-53202615)
chr4 (211-259)||(12466698-12466746)
chr4 (290-353)||(24957572-24957635)
chr4 (509-554)||(23054010-23054056)
chr4 (293-346)||(12485360-12485413)
chr4 (211-251)||(12485474-12485514)
[»] chr5 (15 HSPs)
chr5 (170-430)||(7766894-7767154)
chr5 (170-430)||(18696906-18697168)
chr5 (170-424)||(27169983-27170238)
chr5 (212-299)||(41355543-41355630)
chr5 (170-262)||(6030388-6030480)
chr5 (311-430)||(41355435-41355554)
chr5 (183-260)||(38958230-38958307)
chr5 (170-255)||(7271807-7271892)
chr5 (316-430)||(7271893-7272004)
chr5 (315-380)||(6030326-6030391)
chr5 (508-555)||(18697228-18697275)
chr5 (212-262)||(26656780-26656830)
chr5 (212-262)||(26928367-26928417)
chr5 (315-380)||(26656827-26656892)
chr5 (315-380)||(26928414-26928479)
[»] chr8 (3 HSPs)
chr8 (170-426)||(5994603-5994859)
chr8 (170-430)||(10408798-10409058)
chr8 (178-375)||(6444016-6444214)
[»] chr1 (11 HSPs)
chr1 (216-430)||(34117991-34118207)
chr1 (311-430)||(34655069-34655188)
chr1 (212-375)||(11407928-11408092)
chr1 (177-302)||(34654958-34655083)
chr1 (178-300)||(26236671-26236793)
chr1 (212-302)||(39709015-39709105)
chr1 (312-422)||(39708919-39709028)
chr1 (176-262)||(615740-615826)
chr1 (315-380)||(615823-615888)
chr1 (210-263)||(32058689-32058742)
chr1 (519-555)||(39708651-39708687)
[»] chr7 (1 HSPs)
chr7 (170-407)||(3302548-3302785)
[»] chr3 (3 HSPs)
chr3 (170-262)||(18269763-18269855)
chr3 (170-263)||(43275952-43276045)
chr3 (519-555)||(18269622-18269658)
[»] scaffold0157 (2 HSPs)
scaffold0157 (293-346)||(35064-35117)
scaffold0157 (211-251)||(34963-35003)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 170 - 431
Target Start/End: Complemental strand, 1551747 - 1551486
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 269  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1551747 gagccccgccactaaagacccaaaatcagcactaccaagaaaaccaccacgaagtaccacaaaccaacacaaccaaagatccatcgaaactatataagtt 1551648  T
Q  270 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 369  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1551647 cataagcgaacctatacatgatccatcaccaccatcgtgactgatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaatagagaaa 1551548  T
Q  370 acaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgacat 431  Q
    ||||||||||| ||||||| |||||||||| |||||||| ||||||||||||||||||||||    
T  1551547 acaaatcaaatagtctgagacccacgaaaatcaaacaattacaggcaagcatccaacgacat 1551486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 170 - 430
Target Start/End: Original strand, 1895383 - 1895643
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 269  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1895383 gagccccgccacaaaagacccaaaatcaataccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 1895482  T
Q  270 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 369  Q
    |||||||||||||| ||||||  ||||||||||||| |||| |||| |||||||||||||||| ||||| ||||||| |||||||||||||| |||||||    
T  1895483 cataagcgaacctagatatgactcatcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaa 1895582  T
Q  370 acaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 430  Q
    | ||||||||| ||||||| ||||| |||||||||||| ||| | ||||||||||||||||    
T  1895583 agaaatcaaatagtctgagacccacaaaaaccaaacaaccaccgacaagcatccaacgaca 1895643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 174 - 422
Target Start/End: Complemental strand, 17282090 - 17281841
Alignment:
Q  174 cccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaa-ccaacacaaccaaagatccatcgaaaccatataagttcat 272  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17282090 cccgccacaaaagacccaaaatcagcaccaccaagaaaaccaccatgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcat 17281991  T
Q  273 aagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaaca 372  Q
    |||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||||||||    
T  17281990 aagcaaacctagatatgatccatcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagagagaaaaca 17281891  T
Q  373 aatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatc 422  Q
    |||||||| ||||||| || ||||||| ||||||| ||| || |||||||    
T  17281890 aatcaaatagtctgagacctacgaaaaacaaacaaccaccggaaagcatc 17281841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 178 - 430
Target Start/End: Original strand, 17375258 - 17375510
Alignment:
Q  178 ccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcg 277  Q
    |||| ||||||| |||||||| ||||||| ||||||   ||||||| ||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  17375258 ccacaaaagacctaaaatcagcaccaccatgaaaactgtcatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacagttcataagcg 17375357  T
Q  278 aacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatca 377  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||    
T  17375358 aacctagatatgatccatcaccaccatcgtgatcgatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaatagagaaaacgaatca 17375457  T
Q  378 aattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 430  Q
    ||| || ||||  ||||||||||||||||| ||| | || |||||||||||||    
T  17375458 aatagtgtgagagccacgaaaaccaaacaaccaccgacaggcatccaacgaca 17375510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 170 - 302
Target Start/End: Original strand, 3921565 - 3921697
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 269  Q
    |||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  3921565 gagccccgccacaaatgacccaaaatcagcaccaccaagaaaaccaccgtgaagtaccacaaaccaacacaaccaaacatccatcaaaaccatataagtt 3921664  T
Q  270 cataagcgaacctatatatgatccatcaccacc 302  Q
    ||||||||||| || ||||||||||||||||||    
T  3921665 cataagcgaacttagatatgatccatcaccacc 3921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 34660259 - 34660351
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 262  Q
    ||||| |||||| ||| |||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  34660259 gagcctcgccacaaaacacccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 4869618 - 4869710
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 262  Q
    |||||||||||| |||||||||||||||| |||| || ||||||| |||||||| ||| |||||||| ||||||||||||||||| |||||||    
T  4869618 gagccccgccacaaaagacccaaaatcagcaccatcatgaaaaccgccatgaagcaccgcaaaccaaaacaaccaaagatccatcaaaaccat 4869710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 3921683 - 3921733
Alignment:
Q  311 tgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaa 361  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3921683 tgatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaa 3921733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 508 - 555
Target Start/End: Complemental strand, 1551410 - 1551363
Alignment:
Q  508 tttacgacgacagagaacaaccgcacgtcggaaaggtacggtggtgcg 555  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||    
T  1551410 tttacgacgacggagagcaaccgcacgtcggaaaggtacggtggtgcg 1551363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 380
Target Start/End: Original strand, 4869707 - 4869772
Alignment:
Q  315 ccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaat 380  Q
    ||||||||||||||||||  | ||||| |||| |||||| ||||||| ||||||||| ||||||||    
T  4869707 ccatcaccacctatgttgctatcaaacgtaacctccaccgcaaccaagagagaaaacgaatcaaat 4869772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 547
Target Start/End: Complemental strand, 17281765 - 17281726
Alignment:
Q  508 tttacgacgacagagaacaaccgcacgtcggaaaggtacg 547  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  17281765 tttacgacgacatagagcaaccgcacgtcggaaaggtacg 17281726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 550
Target Start/End: Original strand, 1895712 - 1895754
Alignment:
Q  508 tttacgacgacagagaacaaccgcacgtcggaaaggtacggtg 550  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  1895712 tttacgacgatagagagcaaccgcacgtcggaaaggtatggtg 1895754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 170 - 430
Target Start/End: Original strand, 20740551 - 20740811
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 269  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20740551 gagccccgccactaaagacccaaaatcagcaccaccaagaaaaccaccatgaagtaccataaaccaacacaaccaaagatccatcgaaaccatataagtt 20740650  T
Q  270 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 369  Q
    ||||| |||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  20740651 cataaccgaacctagatatgatccatcaccaccatcgtgaccaatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaagagagaaa 20740750  T
Q  370 acaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 430  Q
    ||||||||||| || |||| ||||||||||||||||||| ||| |||||||||||||||||    
T  20740751 acaaatcaaatagtttgagacccacgaaaaccaaacaataacatgcaagcatccaacgaca 20740811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 183 - 430
Target Start/End: Original strand, 21881453 - 21881700
Alignment:
Q  183 aaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacct 282  Q
    |||||||||||||||| ||||||| || |||  |||||||| |||||||||||||| |||||||||| |||||||||||||  |||||||||||||||||    
T  21881453 aaagacccaaaatcagcaccaccatgataactgccatgaagcaccacaaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacct 21881552  T
Q  283 atatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaattg 382  Q
    | |||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||| ||||| |||| ||||||||| |||||||| |    
T  21881553 agatatgatccatcaccaccatcgtgaccgatccatcaccacctttgttgcgagcaaacataacctccgccacagccaagagagaaaacgaatcaaatag 21881652  T
Q  383 tctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 430  Q
    ||||||  |||||||||||||||||  || | ||||||||||||||||    
T  21881653 tctgagagccacgaaaaccaaacaacgaccgacaagcatccaacgaca 21881700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 555
Target Start/End: Original strand, 20740889 - 20740936
Alignment:
Q  508 tttacgacgacagagaacaaccgcacgtcggaaaggtacggtggtgcg 555  Q
    ||||||| |||||||| |||||||  ||||||||||||||||||||||    
T  20740889 tttacgatgacagagagcaaccgcctgtcggaaaggtacggtggtgcg 20740936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 30845560 - 30845623
Alignment:
Q  200 accaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccata 263  Q
    ||||||| | ||||||||| |||| |||| ||||||||||||||||| || |||| ||||||||    
T  30845560 accaccatggaaaccaccacgaagcaccataaaccaacacaaccaaaaattcatcaaaaccata 30845623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 34213550 - 34213506
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaacc 214  Q
    |||||||||||| |||||||||||||||  ||||||| |||||||    
T  34213550 gagccccgccacaaaagacccaaaatcaacaccaccatgaaaacc 34213506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 4e-98; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 173 - 430
Target Start/End: Original strand, 53202242 - 53202499
Alignment:
Q  173 ccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcat 272  Q
    ||||||||| |||||||||||||||  |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53202242 ccccgccacaaaagacccaaaatcaacaccaccaagaaaaccatcatgaagtaccacaaaccaatacaaccaaagatccatcgaaaccatataagttcat 53202341  T
Q  273 aagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaaca 372  Q
    ||||||| ||| ||||||| |||||||||||||||||| ||||  ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  53202342 aagcgaatctagatatgattcatcaccaccatcgtgaccgatctgtcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaaca 53202441  T
Q  373 aatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 430  Q
    |||||||| || |||| |||||||||||||||||| ||||| ||||||||||||||||    
T  53202442 aatcaaatagtttgagacccacgaaaaccaaacaaccacagacaagcatccaacgaca 53202499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 178 - 430
Target Start/End: Complemental strand, 47518592 - 47518340
Alignment:
Q  178 ccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcg 277  Q
    |||| ||||| |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47518592 ccacaaaagatccaaaatcagcaacaccaagaaaaccaccatgaagtaccacaaacgaacacaaccaaagatccatcgaaaccatataagttcataagcg 47518493  T
Q  278 aacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatca 377  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||  | |||||||||||||||    
T  47518492 aacctagatatgattcatcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaacatagagagaaaacaaatca 47518393  T
Q  378 aattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 430  Q
    ||| ||||||| |||| ||||||||||||| ||| | ||||||||||||||||    
T  47518392 aatagtctgagacccatgaaaaccaaacaaccaccgacaagcatccaacgaca 47518340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 170 - 424
Target Start/End: Complemental strand, 23054382 - 23054129
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 269  Q
    |||| ||||||| |||||||||||||||| ||||||| ||||||| |||| ||| ||||| ||||||||||||||||||||||| |||||||||  ||||    
T  23054382 gagctccgccacaaaagacccaaaatcagcaccaccatgaaaaccgccataaagcaccacgaaccaacacaaccaaagatccattgaaaccataacagtt 23054283  T
Q  270 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 369  Q
    |||||||||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  23054282 cataagcgaaccgagatatgatccagcac-accatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaa 23054184  T
Q  370 acaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatcca 424  Q
    ||||||||||| |||| || |||||||||||||||||| ||| | ||||||||||    
T  23054183 acaaatcaaatagtctcagacccacgaaaaccaaacaaccactgacaagcatcca 23054129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 172 - 280
Target Start/End: Complemental strand, 34227165 - 34227057
Alignment:
Q  172 gccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttca 271  Q
    ||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  34227165 gccccaccacaaaagacccaaaatcagcaccaccaagaaagccaccatgaagtaccacagaccaacacaaccaaagatccattgaaaccatataagttca 34227066  T
Q  272 taagcgaac 280  Q
    |||||||||    
T  34227065 taagcgaac 34227057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 211 - 369
Target Start/End: Original strand, 6410005 - 6410164
Alignment:
Q  211 aaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctatatatgatccatcaccaccatcgtgac 310  Q
    ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||  || ||||||||||||  | || ||||| ||| ||||| |||||||    
T  6410005 aaccaccatgaagcaccacaaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgac 6410104  T
Q  311 tgatccatcaccacctatgttgggagcaaacataacatcca-ccacaaccaatagagaaa 369  Q
     ||||||||||||||||| ||| ||||||||||||| |||| |||| ||||| |||||||    
T  6410105 cgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 6410164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 12469407 - 12469342
Alignment:
Q  194 atcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaac 259  Q
    ||||| ||||||| |  ||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  12469407 atcagcaccaccatggtaaccaccatgaaggaccacaaaccaacacaaccaaggatccatcgaaac 12469342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 508 - 555
Target Start/End: Original strand, 53202568 - 53202615
Alignment:
Q  508 tttacgacgacagagaacaaccgcacgtcggaaaggtacggtggtgcg 555  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  53202568 tttacgacgatagagagcaaccgcacgtcggaaaggtacggtggtgcg 53202615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 12466746 - 12466698
Alignment:
Q  211 aaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaac 259  Q
    ||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  12466746 aaccaccatgaaggaccacaaaccaacataaccaaggatccatcgaaac 12466698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 353
Target Start/End: Complemental strand, 24957635 - 24957572
Alignment:
Q  290 atccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccacc 353  Q
    |||||||  |||| ||||||| ||| ||||||||||||||||| ||||||||||||| ||||||    
T  24957635 atccatcgtcaccttcgtgaccgatacatcaccacctatgttgcgagcaaacataacctccacc 24957572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 23054056 - 23054010
Alignment:
Q  509 ttacgacgacagaga-acaaccgcacgtcggaaaggtacggtggtgc 554  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||    
T  23054056 ttacgacgacagagagagaaccgcacgtcggaaagatacggtggtgc 23054010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 12485413 - 12485360
Alignment:
Q  293 catcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataac 346  Q
    |||||||||||||||||||| |||||||||||  | |||| ||| |||||||||    
T  12485413 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataac 12485360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 12485514 - 12485474
Alignment:
Q  211 aaccaccatgaagtaccacaaaccaacacaaccaaagatcc 251  Q
    ||||||||||||| |||||||||||||||| |||| |||||    
T  12485514 aaccaccatgaagcaccacaaaccaacacatccaaggatcc 12485474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 6e-88; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 170 - 430
Target Start/End: Complemental strand, 7767154 - 7766894
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 269  Q
    |||||||||||| |||||||||||||||  ||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||||  | ||    
T  7767154 gagccccgccacaaaagacccaaaatcaacaccaccatgaaacccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacaatt 7767055  T
Q  270 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 369  Q
    |||||| ||||||| |||||||||||||||||||| ||| | |||| |||||||||||||||| ||||||||||||| |||| ||||||||| |||||||    
T  7767054 cataagtgaacctagatatgatccatcaccaccattgtggccgatcaatcaccacctatgttgcgagcaaacataacctccatcacaaccaagagagaaa 7766955  T
Q  370 acaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 430  Q
    ||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  7766954 acaaatcaaatagtctgagacccacgaaaaccaaacaaccaccggcaagcatccaacgaca 7766894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 170 - 430
Target Start/End: Original strand, 18696906 - 18697168
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 269  Q
    |||||||| ||| ||||| |||||||||| | ||||| ||||| | |||||||| |||||||||||||||||||||||||||| |||| |||||  ||||    
T  18696906 gagccccgtcacaaaagatccaaaatcagcaacaccatgaaaaacgccatgaagcaccacaaaccaacacaaccaaagatccaccgaacccataacagtt 18697005  T
Q  270 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccac--cacaaccaatagaga 367  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||  ||||||||||| | |    
T  18697006 cataagcgaacctagatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgcgggcaaacataacctccaccacacaaccaatataaa 18697105  T
Q  368 aaacaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 430  Q
    ||||||||||||| ||||||| |||||||||||||||||| ||| | |||  |||||||||||    
T  18697106 aaacaaatcaaatagtctgagacccacgaaaaccaaacaaccaccgacaattatccaacgaca 18697168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 170 - 424
Target Start/End: Complemental strand, 27170238 - 27169983
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 269  Q
    |||||||||||| ||||||||||||| || ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||  ||||    
T  27170238 gagccccgccacaaaagacccaaaattagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacagtt 27170139  T
Q  270 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagag-aa 368  Q
    | ||||  || | | ||||||||||| |||||||||||||| ||||||||||||| || |||| ||||||||||||| |||||||||||||| |||| ||    
T  27170138 cgtaagtaaagccaaatatgatccattaccaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaa 27170039  T
Q  369 aacaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatcca 424  Q
    ||| |||||||| | ||||| |||||||||||||||||| ||  || |||||||||    
T  27170038 aacgaatcaaatagcctgagacccacgaaaaccaaacaaccatcggaaagcatcca 27169983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 41355630 - 41355543
Alignment:
Q  212 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctatatatgatccatcacc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||    
T  41355630 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcatgagcgaacatagatatgatccatcacc 41355543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 170 - 262
Target Start/End: Complemental strand, 6030480 - 6030388
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 262  Q
    |||||||||||| |||||||||||||||| ||||||| |||||||  || |||| ||||||||||||||||||||||||||||||||||||||    
T  6030480 gagccccgccacaaaagacccaaaatcagcaccaccatgaaaaccgtcaggaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 6030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 311 - 430
Target Start/End: Complemental strand, 41355554 - 41355435
Alignment:
Q  311 tgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaattgtctgaggcccacgaaaaccaaacaatca 410  Q
    |||||||||||| ||||||||| ||||||| ||||| |||||||||||||| |||||||||||||||||| | || ||  ||||| |||| |||||| ||    
T  41355554 tgatccatcaccgcctatgttgcgagcaaatataacctccaccacaaccaagagagaaaacaaatcaaatagcctaagatccacggaaactaaacaacca 41355455  T
Q  411 caggcaagcatccaacgaca 430  Q
    | ||||||||||||||||||    
T  41355454 ccggcaagcatccaacgaca 41355435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 38958307 - 38958230
Alignment:
Q  183 aaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaacc 260  Q
    |||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38958307 aaagacccaaaatcagcaccatcaaaaaaaccaccatgaagtatcacaaaccaacacaaccaaagatccatcgaaacc 38958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 7271807 - 7271892
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcg 255  Q
    ||||| |||||| ||| |||||||||||| ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  7271807 gagcctcgccacaaaacacccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcg 7271892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 316 - 430
Target Start/End: Original strand, 7271893 - 7272004
Alignment:
Q  316 catcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggc 415  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||| ||   || ||||  |||||||||||| ||| | |    
T  7271893 catcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagt---agccccaataaaaccaaacaaccactgac 7271989  T
Q  416 aagcatccaacgaca 430  Q
    |||||||||||||||    
T  7271990 aagcatccaacgaca 7272004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 380
Target Start/End: Complemental strand, 6030391 - 6030326
Alignment:
Q  315 ccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaat 380  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||| ||||||||| ||||||||    
T  6030391 ccatcaccacctatgttccgatcaaacataacatccaccgcaaccaagagagaaaacgaatcaaat 6030326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 508 - 555
Target Start/End: Original strand, 18697228 - 18697275
Alignment:
Q  508 tttacgacgacagagaacaaccgcacgtcggaaaggtacggtggtgcg 555  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  18697228 tttacgacgacaaagagcaaccgcacgtcggaaatgtacggtggtgcg 18697275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 26656780 - 26656830
Alignment:
Q  212 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 262  Q
    |||||||||||| |||| ||||||| |||||||||||||| ||||||||||    
T  26656780 accaccatgaagcaccataaaccaatacaaccaaagatccgtcgaaaccat 26656830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 26928367 - 26928417
Alignment:
Q  212 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 262  Q
    |||||||||||| |||| ||||||| |||||||||||||| ||||||||||    
T  26928367 accaccatgaagcaccataaaccaatacaaccaaagatccgtcgaaaccat 26928417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 380
Target Start/End: Original strand, 26656827 - 26656892
Alignment:
Q  315 ccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaat 380  Q
    |||||||||| ||| ||| ||||||||||||| | ||| |||||||| ||||||||| ||||||||    
T  26656827 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaat 26656892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 380
Target Start/End: Original strand, 26928414 - 26928479
Alignment:
Q  315 ccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaat 380  Q
    |||||||||| ||| ||| ||||||||||||| | ||| |||||||| ||||||||| ||||||||    
T  26928414 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaat 26928479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 170 - 426
Target Start/End: Original strand, 5994603 - 5994859
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 269  Q
    |||||||||||| |||||||||||||||  | ||||| ||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||  ||||    
T  5994603 gagccccgccacaaaagacccaaaatcaacatcaccatgaataccgccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagtt 5994702  T
Q  270 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatcca-ccacaaccaatagagaa 368  Q
    |||||||||||| | ||||||||||||||||||||| |||  ||||||| | || |||||||| |||||||||||||||||| |||||||||| ||||||    
T  5994703 cataagcgaacccagatatgatccatcaccaccatcatgatcgatccattagca-ctatgttgcgagcaaacataacatccatccacaaccaagagagaa 5994801  T
Q  369 aacaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaac 426  Q
    |||||||||||  || ||||||||||||||||||||||||||| ||||| ||||||||    
T  5994802 aacaaatcaaacagtttgaggcccacgaaaaccaaacaatcaccggcaaccatccaac 5994859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 170 - 430
Target Start/End: Original strand, 10408798 - 10409058
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 269  Q
    |||||||||||| ||||| ||||||| || |||||||  |||||| |||||||| ||||||||||||||||||||||||| |||||||||||||  |  |    
T  10408798 gagccccgccacaaaagatccaaaattagcaccaccattaaaacctccatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacatat 10408897  T
Q  270 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 369  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |    
T  10408898 cataagcgaacctagatatgatccatcaccaccatcgtgaccgttccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaga 10408997  T
Q  370 acaaatcaaattgtctgaggcccacgaaaaccaaacaatcacaggcaagcatccaacgaca 430  Q
    | ||||||||| || |||| ||||| ||||||||| || |||   ||||||||||||||||    
T  10408998 aaaaatcaaatagtttgagacccacaaaaaccaaataaccaccaacaagcatccaacgaca 10409058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 178 - 375
Target Start/End: Original strand, 6444016 - 6444214
Alignment:
Q  178 ccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcg 277  Q
    |||| ||||||||||||||||  |||||| ||||||||||| |||||||||||||||||||||| ||||||| | |||||||||||  || ||||| |||    
T  6444016 ccacaaaagacccaaaatcagccccaccatgaaaaccaccacgaagtaccacaaaccaacacaatcaaagattcttcgaaaccataacagctcataggcg 6444115  T
Q  278 aacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatcca-ccacaaccaatagagaaaacaaat 375  Q
    |||  |||| ||||||||||||||| | |||||  |||||| |||||||| |||| ||||||||||||| |||| |||||||||| ||||||| |||||    
T  6444116 aactcatatctgatccatcaccacctttgtgaccaatccataaccacctaagttgcgagcaaacataacctccatccacaaccaagagagaaatcaaat 6444214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 216 - 430
Target Start/End: Original strand, 34117991 - 34118207
Alignment:
Q  216 ccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctatatatgatccatcaccaccatcgtgactgatc 315  Q
    |||||| | |||||||| |||||||||||||||||||  |||||||||  |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  34117991 ccatgaggcaccacaaatcaacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatc 34118090  T
Q  316 catcaccacctatgttgggagcaaacataacatccac--cacaaccaatagagaaaacaaatcaaattgtctgaggcccacgaaaaccaaacaatcacag 413  Q
    ||||||||||||||||| ||||||||||||| || ||  ||||||||||||||||||||||||||||  ||||||  |||||||||| |||||| ||| |    
T  34118091 catcaccacctatgttgcgagcaaacataacctctaccacacaaccaatagagaaaacaaatcaaataatctgagatccacgaaaactaaacaaccaccg 34118190  T
Q  414 gcaagcatccaacgaca 430  Q
    |||||||||||||||||    
T  34118191 gcaagcatccaacgaca 34118207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 311 - 430
Target Start/End: Original strand, 34655069 - 34655188
Alignment:
Q  311 tgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaattgtctgaggcccacgaaaaccaaacaatca 410  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||    
T  34655069 tgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaaaagagaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaaca 34655168  T
Q  411 caggcaagcatccaacgaca 430  Q
    | || |||||||||||||||    
T  34655169 ccggaaagcatccaacgaca 34655188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 212 - 375
Target Start/End: Complemental strand, 11408092 - 11407928
Alignment:
Q  212 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctatatatgatccatcaccaccatcgtgact 311  Q
    |||||||||||| |||||||||||||||||||||||||   |||||||||||  |  |||||||| |||| |||| ||||||||||||||| ||||| |     
T  11408092 accaccatgaagcaccacaaaccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccaccttcgtggcc 11407993  T
Q  312 gatccatcaccacctatgttgggagcaaacataacatcca-ccacaaccaatagagaaaacaaat 375  Q
    ||||||||||||| ||||||| ||||||||||||| |||| |||| ||||| |||||||||||||    
T  11407992 gatccatcaccacttatgttgcgagcaaacataacctccacccaccaccaagagagaaaacaaat 11407928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 177 - 302
Target Start/End: Original strand, 34654958 - 34655083
Alignment:
Q  177 gccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagc 276  Q
    ||||| ||||| |||||||||| ||||||| ||||||| |||||||| ||||||||||||||||| ||||||| |||| ||||||||  | |||||||||    
T  34654958 gccaccaaagatccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaatcaaagatgcatcaaaaccataacatttcataagc 34655057  T
Q  277 gaacctatatatgatccatcaccacc 302  Q
    ||||||| ||||||||||||||||||    
T  34655058 gaacctagatatgatccatcaccacc 34655083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 26236793 - 26236671
Alignment:
Q  178 ccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcg 277  Q
    |||| |||||| ||||||||| |||| || |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||  || ||||||| |    
T  26236793 ccacaaaagactcaaaatcagcaccatcatgaaaaccaccatgaagcaccacaaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtg 26236694  T
Q  278 aacctatatatgatccatcacca 300  Q
    |||| | || |||||||||||||    
T  26236693 aacccagatctgatccatcacca 26236671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 39709105 - 39709015
Alignment:
Q  212 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctatatatgatccatcaccacc 302  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||  ||||| |||||||||| | ||| ||||||||||||||    
T  39709105 accaccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagatacgatccatcaccacc 39709015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 312 - 422
Target Start/End: Complemental strand, 39709028 - 39708919
Alignment:
Q  312 gatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaattgtctgaggcccacgaaaaccaaacaatcac 411  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||||| |||||||| ||  ||| |||| ||||||||||||| |||    
T  39709028 gatccatcaccacctatattgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaaccac 39708930  T
Q  412 aggcaagcatc 422  Q
     | ||||||||    
T  39708929 cgacaagcatc 39708919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 615740 - 615826
Alignment:
Q  176 cgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 262  Q
    |||||| ||||| ||||| |||| ||||||| |||||||  ||||||| ||||||||| |||||||||||||||||||| |||||||    
T  615740 cgccacaaaagagccaaattcagcaccaccatgaaaaccgtcatgaagcaccacaaactaacacaaccaaagatccatcaaaaccat 615826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 380
Target Start/End: Original strand, 615823 - 615888
Alignment:
Q  315 ccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaaacaaatcaaat 380  Q
    |||||||||||||||||| || |||||||||  |||||||||||||| ||||||||| ||||||||    
T  615823 ccatcaccacctatgttgcgatcaaacataatctccaccacaaccaagagagaaaacgaatcaaat 615888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 32058689 - 32058742
Alignment:
Q  210 aaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccata 263  Q
    ||||||||| |||| |||| ||||||||||| ||||| ||||||| ||||||||    
T  32058689 aaaccaccacgaagcaccataaaccaacacagccaaaaatccatctaaaccata 32058742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 555
Target Start/End: Complemental strand, 39708687 - 39708651
Alignment:
Q  519 agagaacaaccgcacgtcggaaaggtacggtggtgcg 555  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  39708687 agagagcaaccgtacgtcggaaaggtacggtggtgcg 39708651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 170 - 407
Target Start/End: Original strand, 3302548 - 3302785
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagtt 269  Q
    |||||||||||| |||||||||||||||  ||||||| ||||||   ||||||| |||||| ||||| |||||||||||||||||||||| |||  ||||    
T  3302548 gagccccgccacaaaagacccaaaatcaacaccaccatgaaaactgtcatgaagcaccacataccaatacaaccaaagatccatcgaaactataacagtt 3302647  T
Q  270 cataagcgaacctatatatgatccatcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataacatccaccacaaccaatagagaaa 369  Q
     ||||||||| ||| |||||||  ||||||||||||||||  |||| |||||||||||||||| ||||||||||||| |||||||||||||| |||| ||    
T  3302648 aataagcgaatctagatatgatgtatcaccaccatcgtgatcgatctatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagaggaa 3302747  T
Q  370 acaaatcaaattgtctgaggcccacgaaaaccaaacaa 407  Q
    |  |||||||| |||||||  |||||||||||||||||    
T  3302748 atgaatcaaatagtctgagatccacgaaaaccaaacaa 3302785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 170 - 262
Target Start/End: Complemental strand, 18269855 - 18269763
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccat 262  Q
    ||||||| |||| |||||||||||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18269855 gagccccaccacaaaagacccaaaatcaacaccaccatgaaaaccaccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 43275952 - 43276045
Alignment:
Q  170 gagccccgccactaaagacccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccata 263  Q
    |||| ||||||| |||||||||||||||| |||||||  ||||    ||||||| ||||||||||||||||||||||||| |||||||| ||||    
T  43275952 gagctccgccacaaaagacccaaaatcagcaccaccataaaaattgtcatgaagcaccacaaaccaacacaaccaaagattcatcgaaatcata 43276045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 555
Target Start/End: Complemental strand, 18269658 - 18269622
Alignment:
Q  519 agagaacaaccgcacgtcggaaaggtacggtggtgcg 555  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  18269658 agagagcaaccgtacgtcggaaaggtacggtggtgcg 18269622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Original strand, 35064 - 35117
Alignment:
Q  293 catcaccaccatcgtgactgatccatcaccacctatgttgggagcaaacataac 346  Q
    |||||||||||||||||||| |||||||||||  | |||| ||| |||||||||    
T  35064 catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataac 35117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 34963 - 35003
Alignment:
Q  211 aaccaccatgaagtaccacaaaccaacacaaccaaagatcc 251  Q
    ||||||||||||| |||||||||||||||| |||| |||||    
T  34963 aaccaccatgaagcaccacaaaccaacacatccaaggatcc 35003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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