View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_22 (Length: 536)
Name: NF20262_low_22
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 161 - 518
Target Start/End: Original strand, 32267860 - 32268217
Alignment:
| Q |
161 |
acacgataaataattgtaagaaagtgttatgatattgttcgaattagtagagaaagttttatgatatatagtttccttcaacctgtacataaatattgaa |
260 |
Q |
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| T |
32267860 |
acacgataaataattgtaagaaagtgttatgatattgttcgaattagtagagaaagttttatgatatatagtttccttcaacctgtacataaatattgaa |
32267959 |
T |
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| Q |
261 |
caaatcattcatgtatttaaattcaagttcaatcaagcaacatttttcaaaaaattacacggatgggattcgtactacatgaatttggcagtacaacacg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32267960 |
caaatcattcatgtatttaaattcaagttcaatcaagcaacatttttcaaaaaattacacggatgggattcgtactacatgaatttggcagtacaacacg |
32268059 |
T |
|
| Q |
361 |
ataagcctttgacccaacaaacagaaatatacttaaggaatattaatcatttggtcctactgaaatatacacaaacaaagtatattatttggagtatcac |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32268060 |
ataagcctttgacccaacaaacagaaatatacttaaggaatattaatcatttggtcctactgaaatatacacaaacaaagtatattatttggagtatcac |
32268159 |
T |
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| Q |
461 |
atactaggaaccaataaacaaaggtaaatcaaatgtgttgagctgctatccactttgg |
518 |
Q |
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| T |
32268160 |
atactaggaaccaataaacaaaggtaaatcaaatgtgttgagctgctatccactttgg |
32268217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 32267725 - 32267846
Alignment:
| Q |
1 |
ctttacatccaccgaatatgtaatgataaaaatatgtctaccgtaatttatcttgctacactctacatatatgaacacttttatccattctccaaaacta |
100 |
Q |
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| T |
32267725 |
ctttacatccaccgaatatgtaatgataaaaatatgtctaccgtaatttatcttgctacactctacatatatgaacacttttatccattctccaaaacta |
32267824 |
T |
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| Q |
101 |
ttcatgaagaatcatatttgta |
122 |
Q |
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| T |
32267825 |
ttcatgaagaatcatatttgta |
32267846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 32271836 - 32272045
Alignment:
| Q |
4 |
tacatccaccgaatatgtaatgataaaaatatgtctaccgtaatttatcttgctacactc--tacatatatgaacacttttatccattctccaaaactat |
101 |
Q |
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| T |
32271836 |
tacatccaccgaatatgta--gataaaaatatgtatacaataatttatcttgctacactcaatacataaatgaacccttttatccattctccaaaa-tat |
32271932 |
T |
|
| Q |
102 |
tcatgaagaatcatatttgtagaacctagaaggaatcactaaatagtaattcctaaatgacacgataaataattgtaagaaagtgttatgatattgttcg |
201 |
Q |
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||||||| |||||| | ||||| || |||| ||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
32271933 |
tcatgaa---tcatatctatagaaacttgaagaaatcactaaatagtagttccaaaatgacacaacaaataattgtaagaaagtgttatgatattgttcg |
32272029 |
T |
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| Q |
202 |
aattagtagagaaagt |
217 |
Q |
| |
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|||||||||| ||||| |
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| T |
32272030 |
aattagtagaaaaagt |
32272045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 276 - 498
Target Start/End: Original strand, 32272176 - 32272409
Alignment:
| Q |
276 |
tttaaattcaagttcaatcaagcaacatttttcaaaaaattacacggatgggattcgtactacatgaatttggcagtacaacacgataagcctttgaccc |
375 |
Q |
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||||||||||||||||||||||||| ||||||||| | |||||| ||| |||||| ||||| |||||||||||||||||| ||||||||| ||| || |
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| T |
32272176 |
tttaaattcaagttcaatcaagcaatatttttcaatagtttacacagataggattcttactagatgaatttggcagtacaatacgataagcttttttcct |
32272275 |
T |
|
| Q |
376 |
aacaaacagaaat-----------atacttaaggaatattaatcatttggtcctactgaaatatacacaaacaaag-tatattatttggagtatcacata |
463 |
Q |
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||||||||||||| ||||||| |||||||||| |||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
32272276 |
aacaaacagaaatatactactcaaatacttacagaatattaataatttcttcctacggaaatatacacaaacaaagttatatta-ttggagtatcacata |
32272374 |
T |
|
| Q |
464 |
ctaggaaccaataaacaaaggtaaatcaaatgtgt |
498 |
Q |
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||||||||||||||||| |||||||| ||| |||| |
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| T |
32272375 |
ctaggaaccaataaacacaggtaaataaaaggtgt |
32272409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 48169925 - 48170069
Alignment:
| Q |
71 |
atgaacacttttatccattctccaaaac-tattcatgaagaatcatatttgtagaacctagaaggaatcactaaatagtaattcctaaatgacacgataa |
169 |
Q |
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||||||||||| ||| |||||||||| |||||||||| |||||||| || |||||||||||||||| | || ||| || | ||| |||| ||||| |
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| T |
48169925 |
atgaacactttagtcctttctccaaaaaatattcatgaa---tcatatttataaaacctagaaggaatcattggatggtagtttcaaaaagacatgataa |
48170021 |
T |
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| Q |
170 |
ataattgtaagaaagtgttatgatattgttcgaattagtagagaaagt |
217 |
Q |
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|||||||||||||| |||||| ||||||||| |||||||||||||||| |
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| T |
48170022 |
ataattgtaagaaactgttataatattgttcaaattagtagagaaagt |
48170069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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