View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_23 (Length: 529)
Name: NF20262_low_23
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 2429544 - 2429030
Alignment:
| Q |
1 |
attacaacctacacgggaagagnnnnnnnntttgaccatcatttaccttgctttgaaattgaaaaatagtttatttaaattttcagtcatataaaaatac |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429544 |
attacaacctacacgggaagagaaaaaaaatttgaccatcatttaccttgctttgaaattgaaaaatagtttatttaaattttcagtcatataaaaatac |
2429445 |
T |
|
| Q |
101 |
cttattgttgacaaaattgaagagaagcccacgaactgctttccgcataccctgatgttgaatgttgaacagatcgaaaatttttggtaaacagtcctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429444 |
cttattgttgacaaaattgaagagaagcccacgaactgctttccgcataccctgatgttgaatgttgaacagatcgaaaatttttggtaaacagtcctca |
2429345 |
T |
|
| Q |
201 |
tcaaccatggccacttggttatgaaaatcctacattaaatttaaaaataatatatcaaaagaataacaaagctgtagcaagcaatttatccaccaatttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429344 |
tcaaccatggccacttggttatgaaaatcctacattaaatttaaaaataatatatcaaaagaataacaaagctgtagcaagcaatttatccaccaatttg |
2429245 |
T |
|
| Q |
301 |
atgaaactagcacggctacagtgcacaacaacaatccaattgaatggaaccccaattcttaaacggcagggnnnnnnntggaaattgaataacagggaag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2429244 |
atgaaactagcacggctacagtgcacaacaacaatccaattgaatggaaccccaattcttaaacggcagggaaaaaaatggaaattgaataacagggaag |
2429145 |
T |
|
| Q |
401 |
aataacacgtagcagcagcaaccaacaattcatatgcgcagcaaattaaagaggttagcacgacacagtttaaattctagaatgggagttcactttcgaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429144 |
aataacacgtagcagcagcaaccaacaattcatatgcgcagcaaattaaagaggttagcacgacacagtttaaattctagaatgggagttcactttcgaa |
2429045 |
T |
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| Q |
501 |
caaccatgcagcaag |
515 |
Q |
| |
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||||||||||||||| |
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| T |
2429044 |
caaccatgcagcaag |
2429030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 322718 - 322669
Alignment:
| Q |
265 |
aacaaagctgtagcaagcaatttatccaccaatttgatgaaactagcacg |
314 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
322718 |
aacaaagctgcagcaagcaatttatccaccaatttgatgaaactagcacg |
322669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 18295034 - 18295096
Alignment:
| Q |
254 |
atcaaaagaataacaaagctgtagcaagcaatttatccaccaatttgatgaaactagcacggc |
316 |
Q |
| |
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||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||| |
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| T |
18295034 |
atcaaaagaataacaaagctgcagcaaccaattcatccaccaatttgaataaactagcacggc |
18295096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 91
Target Start/End: Original strand, 1512315 - 1512344
Alignment:
| Q |
62 |
aaaaatagtttatttaaattttcagtcata |
91 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1512315 |
aaaaatagtttatttaaattttcagtcata |
1512344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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