View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_24 (Length: 529)
Name: NF20262_low_24
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 20 - 514
Target Start/End: Complemental strand, 36991368 - 36990865
Alignment:
| Q |
20 |
gctgctgctgctgcactttctgcctgttgttgtgtaccaccacctccatagaaattactatgtgcacctcctcctcctatccccaacaaatccagtgtca |
119 |
Q |
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| T |
36991368 |
gctgctgctgctgcactttctgcctgttgttgtgtaccacc---tccatagaaattactatgtgcacctcctcctcctatccccaacaaatccagtgtca |
36991272 |
T |
|
| Q |
120 |
ttacatctccaccacccttacttccactaatgttcataacattattactattacttgatgcacctcc------------aacaacactattaatgctttg |
207 |
Q |
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| T |
36991271 |
ttacatctccaccacccttacttccactaatgttcataacattattactattacttgatgcacctcctcctccacctccaacaacactattaatgctttg |
36991172 |
T |
|
| Q |
208 |
agtttgattgttttgttcaatgatcttcgataaagccttactttgatccaatatagcattaaacatatcaactccattcattccaacacctcctccattt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36991171 |
agtttgattgttttgttcaatgatcttcgataaagccttactttgatccaatatagcattaaacatatcaactccattcattccaacaccacctccattt |
36991072 |
T |
|
| Q |
308 |
attatcccatttgcattgaaattattattgtagtgttgttgttgctgttgcatgtagtggttcatgaaagcatgtccttgttgttgcaccacaccaaact |
407 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36991071 |
attatcccatttgcattgaaattattattgtaatgttgttgttgctgttgcatgtagtggttcatgaaagcatgtccttgttgttgcaccaaaccaaact |
36990972 |
T |
|
| Q |
408 |
gcggcggcgccatcatgtttgtagcaacggtagttttatccgtcatgatacctgcattattattactcacagttgcacccatttgagcagctttttgtag |
507 |
Q |
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| T |
36990971 |
gcggcggcgccatcatgttcgtagcaacggtagttttatcagtcatgatacctgcattattattactcacagttgcacccatttgagcagctttttgtag |
36990872 |
T |
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| Q |
508 |
caatgca |
514 |
Q |
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| T |
36990871 |
caatgca |
36990865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 46621400 - 46621319
Alignment:
| Q |
214 |
attgttttgttcaatgatcttcgataaagccttactttgatccaatatagcattaaacatatcaactccattcattccaaca |
295 |
Q |
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||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||| ||||||| || |||| |||||| |||| |
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| T |
46621400 |
attgttttgctcaatgatctttgataaggccttactttgatccaatatagaattgaacatattaaatccactcattctaaca |
46621319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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