View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_29 (Length: 505)
Name: NF20262_low_29
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 33377430 - 33377692
Alignment:
| Q |
19 |
agtattcctttaattcatgtacaactgttcaggatttgagttgcttgcaagttgaatccgtttgattcagtgttaagnnnnnnnnnnnnnnnntgctcta |
118 |
Q |
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| T |
33377430 |
agtattcctttaattcatgtacaactgttcaggatttgagttgcttgcaagttggatccgtttgattcagtgttatgaaaaagaaaagaaaaatgctcta |
33377529 |
T |
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| Q |
119 |
ggtacgatctcaatcagacgttcaccttgactgcgtgcaactgattgcacgcagtctatggcttcatggaatccaagtttaatgtcatgaagtaaaactt |
218 |
Q |
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| T |
33377530 |
ggtactatctcaatcagacgttcatcttgactgcgtgcaactgattgcacgcagtctatggcttcatggaatccaagtttaatgtcatgaagtaaaactt |
33377629 |
T |
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| Q |
219 |
tatattgatggaaaaattatcggttgagttatttaaacattaatacatattgtagcttaaatt |
281 |
Q |
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| T |
33377630 |
tatattgatggaaaaattatcggttgagttatttaaacattaatacatattgtagcttaaatt |
33377692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 346 - 491
Target Start/End: Original strand, 33377756 - 33377901
Alignment:
| Q |
346 |
aaaaatgtctctt-aagttataatgtaagataatttaaccctttactaannnnnnnggtccaataagttacaaacagatgagatgttttaatcatttaag |
444 |
Q |
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| T |
33377756 |
aaaaatgtctctttaagttataatgtaagataatttaaccttttactaatttttt-ggtccaataagttacaaacagattagatgttttaatcatttaag |
33377854 |
T |
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| Q |
445 |
ttacagacattagataatttaatcacttgaattataaatgttagccc |
491 |
Q |
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| T |
33377855 |
ttacaaacattagatactttaatcacttgaattataaatgttagccc |
33377901 |
T |
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