View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20262_low_33 (Length: 484)

Name: NF20262_low_33
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20262_low_33
NF20262_low_33
[»] chr1 (3 HSPs)
chr1 (12-464)||(52092679-52093130)
chr1 (12-457)||(52082489-52082928)
chr1 (255-363)||(19468488-19468596)
[»] chr8 (6 HSPs)
chr8 (268-364)||(27922509-27922605)
chr8 (268-358)||(17636403-17636493)
chr8 (268-358)||(18315275-18315365)
chr8 (268-364)||(32151302-32151398)
chr8 (270-364)||(17628018-17628112)
chr8 (270-310)||(21235613-21235653)
[»] chr5 (4 HSPs)
chr5 (255-360)||(41889543-41889648)
chr5 (268-364)||(32267476-32267572)
chr5 (273-363)||(41901542-41901632)
chr5 (291-364)||(20478107-20478180)
[»] chr4 (23 HSPs)
chr4 (187-364)||(1548344-1548522)
chr4 (268-364)||(8187093-8187189)
chr4 (287-455)||(1754429-1754589)
chr4 (268-361)||(7307864-7307957)
chr4 (268-364)||(546914-547010)
chr4 (268-364)||(1524488-1524584)
chr4 (255-358)||(532196-532299)
chr4 (178-237)||(1754611-1754670)
chr4 (270-364)||(553480-553574)
chr4 (267-364)||(3438567-3438663)
chr4 (289-353)||(640927-640991)
chr4 (268-364)||(1513409-1513505)
chr4 (341-457)||(6006235-6006351)
chr4 (268-364)||(8184032-8184128)
chr4 (187-237)||(1552685-1552735)
chr4 (270-364)||(1552771-1552865)
chr4 (268-334)||(12121459-12121525)
chr4 (295-364)||(558499-558568)
chr4 (255-364)||(55908717-55908826)
chr4 (18-78)||(547194-547254)
chr4 (296-364)||(1508033-1508101)
chr4 (401-457)||(1528338-1528394)
chr4 (268-364)||(1537769-1537865)
[»] chr3 (12 HSPs)
chr3 (182-364)||(51113694-51113879)
chr3 (268-364)||(51120895-51120991)
chr3 (272-419)||(33714861-33715008)
chr3 (281-419)||(33708989-33709127)
chr3 (291-364)||(13470757-13470830)
chr3 (283-350)||(37580837-37580904)
chr3 (45-103)||(27005557-27005615)
chr3 (44-78)||(33396786-33396820)
chr3 (44-78)||(33708804-33708838)
chr3 (44-78)||(37580607-37580641)
chr3 (283-353)||(37587571-37587641)
chr3 (45-78)||(33093715-33093748)
[»] chr6 (17 HSPs)
chr6 (268-364)||(6432162-6432258)
chr6 (267-366)||(6423216-6423315)
chr6 (290-359)||(6585261-6585330)
chr6 (291-366)||(6426510-6426585)
chr6 (272-363)||(14802338-14802429)
chr6 (291-364)||(6394865-6394938)
chr6 (268-361)||(6410010-6410103)
chr6 (291-361)||(10579761-10579831)
chr6 (296-364)||(6402861-6402929)
chr6 (280-364)||(6594620-6594704)
chr6 (280-364)||(14820694-14820778)
chr6 (291-358)||(6415973-6416040)
chr6 (291-364)||(6596953-6597026)
chr6 (291-360)||(7119162-7119231)
chr6 (291-360)||(7131640-7131709)
chr6 (291-351)||(6589348-6589408)
chr6 (270-310)||(12102321-12102361)
[»] chr2 (5 HSPs)
chr2 (268-350)||(32785774-32785856)
chr2 (300-358)||(44575529-44575587)
chr2 (272-364)||(45245091-45245183)
chr2 (180-246)||(43277371-43277440)
chr2 (255-364)||(1037653-1037762)
[»] scaffold0041 (1 HSPs)
scaffold0041 (293-364)||(39185-39256)
[»] chr7 (1 HSPs)
chr7 (291-364)||(15092176-15092249)


Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 12 - 464
Target Start/End: Complemental strand, 52093130 - 52092679
Alignment:
Q  12 gtgagaagaattgtaattgtttgatggactttgttgtataccctcaagtgaagtctctccatttggcaggcaatccacggttgaaaaatgaaagcatcaa 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52093130 gtgataagaattgtaattgtttgatggactttgttgtataccctcaagtgaagtctctccatttggcaggcaatccacggttgaaaaatgaaagcatcaa 52093031  T
Q  112 aatgttgccttctcttttcccaaacctgcaggggcttgacctgagaatgagatattgccattgctattgcatatccgaaggtattgttgaagttttaaga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52093030 aatgttgccttctcttttcccaaacctgcaggggcttgacctgagaatgagatattgccattgctattgcatatccgaaggtattgttgaagttttaaga 52092931  T
Q  212 tgttgtaaaattactcatttgaacttgagatcttggtcaacattgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  52092930 tgttgtaaaattactcatttgaacttgagatcttggtcaacattgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttggcaa 52092831  T
Q  312 agacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactacatttggacttggaacggtgtgatcatatcacagagaaagg 411  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  52092830 agacaaaaattgatgatgacacattgtatgtgatctcaaagagtttttgtgggctactacaattggacttggaacggtgtgatcatatcacagagaaagg 52092731  T
Q  412 agtgaggcacgtagtagaaaactgcacacgattgagagagataaatatacgag 464  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52092730 agtgaggcacgtagta-aaaactgcacacgattgagagagataaatatacgag 52092679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 12 - 457
Target Start/End: Complemental strand, 52082928 - 52082489
Alignment:
Q  12 gtgagaagaattgtaattgtttgatggactttgttgtataccctcaagtgaagtctctccatttggcaggcaatccacggttgaaaaatgaaagcatcaa 111  Q
    |||| ||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||  |||||| ||||||||||||||    
T  52082928 gtgataagaactctaattctttgctggactttgttgtataccctcaagtgaagtctctccatttggctcgcaatccattgttgaagaatgaaagcatcaa 52082829  T
Q  112 aatgttgccttctcttttcccaaacctgcaggggcttgacctgagaatgagatattgccattgctattgcatatccgaaggtattgttgaagttttaaga 211  Q
    ||||||| |||||||||| |||||| |||| | |||||||||||||      ||||||||||||||||||||||| || ||||| |||||||||||||||    
T  52082828 aatgttggcttctctttttccaaacttgcaagtgcttgacctgaga------tattgccattgctattgcatatctgacggtatcgttgaagttttaaga 52082735  T
Q  212 tgttgtaaaattactcatttgaacttgagatcttggtcaacattgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaa 311  Q
    | ||||||||||| ||| ||| || |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082734 tattgtaaaattattcacttggacatgagatcttgttcaacactgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaa 52082635  T
Q  312 agacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactacatttggacttggaacggtgtgatcatatcacagagaaagg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52082634 agacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactacaattggacttggaacggtgtgatcatatcacagagaaagg 52082535  T
Q  412 agtgaggcacgtagtagaaaactgcacacgattgagagagataaat 457  Q
    |||  |||||||||||||||||||||||||| ||||||||||||||    
T  52082534 agtcgggcacgtagtagaaaactgcacacgactgagagagataaat 52082489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 363
Target Start/End: Original strand, 19468488 - 19468596
Alignment:
Q  255 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 354  Q
    |||||||||||  | ||||||||  |||| ||||  ||||||||||||| |||||| | |||||  |||||||||||||| | ||||||||||||||||     
T  19468488 tgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaagaa 19468587  T
Q  355 ttgttgtgg 363  Q
     ||||||||    
T  19468588 ctgttgtgg 19468596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 364
Target Start/End: Complemental strand, 27922605 - 27922509
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||| ||||| |||||||||||||||||||||||||| | |||||  ||||||||||| || | ||| |||||||||||||||||||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtggg 27922509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 268 - 358
Target Start/End: Original strand, 17636403 - 17636493
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 358  Q
    |||||||||| ||||| |||||||||||||||||||||||||| | |||  | |||| |||||| ||||||||||||||||||||||||||    
T  17636403 aatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgt 17636493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 268 - 358
Target Start/End: Original strand, 18315275 - 18315365
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 358  Q
    |||||||||| ||||| ||||| |||||||||||||||||||| | |||||| ||||||||||| || | |||||||||||||||||||||    
T  18315275 aatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgt 18315365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 364
Target Start/End: Complemental strand, 32151398 - 32151302
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||  ||||||||||  |||||||||| |||||||||   ||||   |||||||||||||| | ||||||||||||||||||||| |||||    
T  32151398 aatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtggg 32151302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 364
Target Start/End: Original strand, 17628018 - 17628112
Alignment:
Q  270 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||| || |||| |||||||||||||||||||||||| | || | | |||||||| || || |   |||||||||||||| ||||| ||||    
T  17628018 tgaactttaaactttctaaattggaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgttttggg 17628112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 21235653 - 21235613
Alignment:
Q  270 tgaactttcaagtttccaaattggaggtgttgaacttgtca 310  Q
    |||||||| ||||| ||||| ||||||||||||||||||||    
T  21235653 tgaactttgaagttcccaaactggaggtgttgaacttgtca 21235613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 255 - 360
Target Start/End: Original strand, 41889543 - 41889648
Alignment:
Q  255 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 354  Q
    |||| ||||||  |||||||||| ||||| |||||||||||||||||||||| ||| | |||||| |||||||||||||| | |||  ||||||||||||    
T  41889543 tgaagctacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagag 41889642  T
Q  355 ttgttg 360  Q
    ||||||    
T  41889643 ttgttg 41889648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 364
Target Start/End: Complemental strand, 32267572 - 32267476
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||| ||||| ||||||||||||| |||||||||||| | |||| | ||||||||||| || | ||| |||||||||||||||||||||||    
T  32267572 aatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtggg 32267476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 273 - 363
Target Start/End: Original strand, 41901542 - 41901632
Alignment:
Q  273 actttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgg 363  Q
    ||||| ||||| ||||| |||||||||||||||||||| | |||||| ||||||||||| || | ||| ||||||||||||||||||||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtgg 41901632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 20478107 - 20478180
Alignment:
Q  291 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||||||||||||| | |||||  ||||||| |||||||| | ||||||||||| || ||||||||||    
T  20478107 tggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtggg 20478180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 364
Target Start/End: Original strand, 1548344 - 1548522
Alignment:
Q  187 cgaaggtattgttgaagttttaagatgttgtaaaattactcatttgaacttgagatcttggtc-aacattgaatctactttcaa-tgaactttcaagttt 284  Q
    ||||||||||  ||||||||||||||||||||| ||||  || |||||||| || || | ||  || | |||| |||||||  | |||||||| || ||     
T  1548344 cgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaactt-agctcgtagtttaaaagtgaagctactttggactgaactttgaaattc 1548442  T
Q  285 ccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    ||||| |||||||||||||||||||| | ||||  ||||||||||||||| |  ||||||||||||||||||||||||||    
T  1548443 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtggg 1548522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 8187093 - 8187189
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||| || |||||||| |||||||||||||||||||| | |||| | |||||||| ||||| | ||||  || ||||||||||||||||||    
T  8187093 aatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtggg 8187189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 287 - 455
Target Start/End: Complemental strand, 1754589 - 1754429
Alignment:
Q  287 aaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactacatttggacttggaac 386  Q
    ||||||||||||||||||||||| |||||||||||| | ||||        ||  |||||||||||||||| | |||  |||| || ||||| || |||     
T  1754589 aaattggaggtgttgaacttgtcgaagacaaaaattaaggatg--------tacatgatctcaaagagttgctctggactactgcaattggatttagaaa 1754498  T
Q  387 ggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacacgattgagagagataa 455  Q
      ||| || ||||||||||||||||||||| ||| ||||||||||| ||||||||  ||| ||||||||    
T  1754497 aatgttataatatcacagagaaaggagtgaagcaagtagtagaaaaatgcacacgcctgaaagagataa 1754429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 361
Target Start/End: Complemental strand, 7307957 - 7307864
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 361  Q
    |||||||||| ||||| ||||||||||||| |||||||||||| | ||| || ||||||||||| || |   | ||||||||||||||||||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgt 7307864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 364
Target Start/End: Complemental strand, 547010 - 546914
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||| ||||| | |||||||||||| |||||||||||   ||||   |  ||||||||||| | |||||||||||||||||||||||||||    
T  547010 aatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 1524488 - 1524584
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||| ||||| |||| |||||||||||||| ||||||   ||||   |||||||||||||| | ||| |||||||| |||||||| |||||    
T  1524488 aatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtggg 1524584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 358
Target Start/End: Complemental strand, 532299 - 532196
Alignment:
Q  255 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 354  Q
    |||||||||||  |||||||||| ||||  ||||  | |||||||||||||||||| | ||||| |||||||||||||   | ||||||| ||||||||     
T  532299 tgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaaagctttatgtgacctcaaagaa 532200  T
Q  355 ttgt 358  Q
    ||||    
T  532199 ttgt 532196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 1754670 - 1754611
Alignment:
Q  178 ttgcatatccgaaggtattgttgaagttttaagatgttgtaaaattactcatttgaactt 237  Q
    |||||||||  ||||||| ||||||||||||||||||| ||||||||| || ||||||||    
T  1754670 ttgcatatctaaaggtatcgttgaagttttaagatgttctaaaattacacaattgaactt 1754611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 364
Target Start/End: Complemental strand, 553574 - 553480
Alignment:
Q  270 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||| |||||  |||| ||||||||||||||||||||   |||| | ||||||||||| || |  ||||||| ||||||||||||| ||||    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctggg 553480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 364
Target Start/End: Original strand, 3438567 - 3438663
Alignment:
Q  267 caatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    ||||||||||| | ||||| ||||||||||| |||| ||||||| | |||| | |||||||| ||| | |  |||| |||||||||||||||||||||    
T  3438567 caatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgat-aaatactccatgtaatctcaaagagttgttgtggg 3438663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 640991 - 640927
Alignment:
Q  289 attggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaaga 353  Q
    |||||||||||||||||||||| | |||||  |||||||||||||| | || |||| ||||||||    
T  640991 attggaggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaaga 640927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 1513409 - 1513505
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||| ||||| ||||| | || |||||||||||||||   |||||  |||||||||||||| | || || ||||||||| ||||| |||||    
T  1513409 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtggg 1513505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 457
Target Start/End: Complemental strand, 6006351 - 6006235
Alignment:
Q  341 gtgatctcaaagagttgttgtgggatactacatttggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacac 440  Q
    |||||||||| |||||| | |||| |||| ||  | || |||| ||| ||| || || ||||| |||| ||||||| ||| || ||||||||||||| ||    
T  6006351 gtgatctcaatgagttgctttgggctactgcaacttgatttgggacgttgttatgatgtcacaaagaagggagtgatgcaagtcgtagaaaactgcaaac 6006252  T
Q  441 gattgagagagataaat 457  Q
     ||||||||||||||||    
T  6006251 aattgagagagataaat 6006235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 8184032 - 8184128
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||| ||||| | ||| | |||||||||||||||||| | |||| | ||||||||  | || | ||||  |||||||||||||||||||||    
T  8184032 aatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtggg 8184128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 1552685 - 1552735
Alignment:
Q  187 cgaaggtattgttgaagttttaagatgttgtaaaattactcatttgaactt 237  Q
    ||||||||||  ||||||||||||||||||||| ||||  |||||||||||    
T  1552685 cgaaggtatttgtgaagttttaagatgttgtaagattagacatttgaactt 1552735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 364
Target Start/End: Original strand, 1552771 - 1552865
Alignment:
Q  270 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||| || || ||||| |||| |||||||| |||||| | ||||| ||| ||||||||||| |  ||||||| ||||||| |||| |||||    
T  1552771 tgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtggg 1552865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 334
Target Start/End: Original strand, 12121459 - 12121525
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaaca 334  Q
    |||||||||| ||||| ||||| | || ||||||||||||||| | |||||  ||||||||||||||    
T  12121459 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaaca 12121525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 364
Target Start/End: Complemental strand, 558568 - 558499
Alignment:
Q  295 ggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    ||||||||||||||||   ||| | |||||||||||| || |  |||||||||||||||||||| |||||    
T  558568 ggtgttgaacttgtcattaacatatattgatgatgaagcactccatgtgatctcaaagagttgtcgtggg 558499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 364
Target Start/End: Original strand, 55908717 - 55908826
Alignment:
Q  255 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 354  Q
    |||| ||||||  ||| |||||| ||||| |  |||| |||||||| ||||||||| | |||    |||||||||||||| | ||| ||||||||||||     
T  55908717 tgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaa 55908816  T
Q  355 ttgttgtggg 364  Q
    ||||||||||    
T  55908817 ttgttgtggg 55908826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 547254 - 547194
Alignment:
Q  18 agaattgtaattgtttgatggactttgttgtataccctcaagtgaagtctctccatttggc 78  Q
    |||||| ||||| ||| | ||| |||||||||  ||||||| |||||||||||||||||||    
T  547254 agaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccatttggc 547194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 1508033 - 1508101
Alignment:
Q  296 gtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    ||||||||||||||| | || ||  |||||||||||||| ||| ||| ||||||||| ||||| |||||    
T  1508033 gtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtggg 1508101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 1528338 - 1528394
Alignment:
Q  401 acagagaaaggagtgaggcacgtagtagaaaactgcacacgattgagagagataaat 457  Q
    |||||||| ||||| | ||| || |||||||||||||||| | ||||||||||||||    
T  1528338 acagagaatggagtcatgcaagttgtagaaaactgcacacaactgagagagataaat 1528394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 1537769 - 1537865
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||| ||||| ||||| | || ||||||||||||||| | |||||  || ||||  ||||| ||| ||| ||||||||| ||||| |||||    
T  1537769 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtggg 1537865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 182 - 364
Target Start/End: Original strand, 51113694 - 51113879
Alignment:
Q  182 atatccgaaggtattgttgaagttttaa---gatgttgtaaaattactcatttgaacttgagatcttggtcaacattgaatctactttcaatgaactttc 278  Q
    |||||||||||||||  | |||||||||   |||||||||||||||  |||||||| ||    |  || |||| | |||| ||||||  ||||||||||     
T  51113694 atatccgaaggtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttg 51113793  T
Q  279 aagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    ||| | ||||| ||||||||||  |||||||||| ||||   |||||||||||||| | ||||||||||| |||||||||||||||    
T  51113794 aagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtggg 51113879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 51120895 - 51120991
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||| |||||  ||||||||||||||||||||||||  | |||| | |||||||||||| | | ||||| ||||||||||||||| |||||    
T  51120895 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 51120991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 272 - 419
Target Start/End: Original strand, 33714861 - 33715008
Alignment:
Q  272 aactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactac 371  Q
    |||||| ||||||||||| |||||||| |||||||||||||  ||| |||||||||||   ||||||||| ||| |||||||||||   | || | ||||    
T  33714861 aactttgaagtttccaaactggaggtgctgaacttgtcaaactcaagaattgatgatggcgcattgtatgcgatttcaaagagttgccctcggcttctac 33714960  T
Q  372 atttggacttggaacggtgtgatcatatcacagagaaaggagtgaggc 419  Q
    || ||||| |||||   ||| ||||| |||| ||||| ||||||||||    
T  33714961 atctggacctggaagattgtcatcatgtcacggagaagggagtgaggc 33715008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 419
Target Start/End: Original strand, 33708989 - 33709127
Alignment:
Q  281 gtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactacatttggact 380  Q
    ||||||||| |||||||| ||||||||||| |  ||| |||||||||||   |||||||||  ||||||||||||||   | || | |||||| |||||     
T  33708989 gtttccaaactggaggtgctgaacttgtcagactcaagaattgatgatggtgcattgtatgcaatctcaaagagttgccctcggcttctacatctggacc 33709088  T
Q  381 tggaacggtgtgatcatatcacagagaaaggagtgaggc 419  Q
    ||||| | ||| ||||| |||| ||||| ||||||||||    
T  33709089 tggaaggatgtcatcatgtcacggagaagggagtgaggc 33709127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 13470757 - 13470830
Alignment:
Q  291 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||||||||||||||| |||||  || ||||| ||||| | ||| |||||||||||| ||||||||||    
T  13470757 tggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtggg 13470830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 37580837 - 37580904
Alignment:
Q  283 ttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaa 350  Q
    ||||||| | ||||| ||||||||||||||  ||| |||||||||| ||  |||||||||||||||||    
T  37580837 ttccaaactcgaggtattgaacttgtcaaactcaagaattgatgataaagtattgtatgtgatctcaa 37580904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 27005557 - 27005615
Alignment:
Q  45 ttgtataccctcaagtgaagtctctccatttggcaggcaatccacggttgaaaaatgaa 103  Q
    ||||||||  |||||||||||||||| ||||||| | ||||||||| |||||| |||||    
T  27005557 ttgtatacaatcaagtgaagtctctctatttggctgacaatccacgtttgaaagatgaa 27005615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 33396820 - 33396786
Alignment:
Q  44 gttgtataccctcaagtgaagtctctccatttggc 78  Q
    |||||||||| ||||||||||||||||||||||||    
T  33396820 gttgtataccatcaagtgaagtctctccatttggc 33396786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 33708804 - 33708838
Alignment:
Q  44 gttgtataccctcaagtgaagtctctccatttggc 78  Q
    |||||||||| ||||||||||||||||||||||||    
T  33708804 gttgtataccatcaagtgaagtctctccatttggc 33708838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 37580607 - 37580641
Alignment:
Q  44 gttgtataccctcaagtgaagtctctccatttggc 78  Q
    |||||||||| ||||||||||||||||||||||||    
T  37580607 gttgtataccatcaagtgaagtctctccatttggc 37580641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 353
Target Start/End: Original strand, 37587571 - 37587641
Alignment:
Q  283 ttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaaga 353  Q
    ||||||| ||||||| |||||||||||| |  ||| |||||||||| ||  |||||||| |||||||||||    
T  37587571 ttccaaactggaggtattgaacttgtcacactcaagaattgatgataaagtattgtatgcgatctcaaaga 37587641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 33093715 - 33093748
Alignment:
Q  45 ttgtataccctcaagtgaagtctctccatttggc 78  Q
    ||||||||| ||||||||||||||||||||||||    
T  33093715 ttgtataccgtcaagtgaagtctctccatttggc 33093748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 364
Target Start/End: Complemental strand, 6432258 - 6432162
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||| ||||| ||||  || ||||||||||||||||||| ||||   |||||||||||||| | |||||||||| ||||| ||||||||||    
T  6432258 aatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtggg 6432162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 267 - 366
Target Start/End: Complemental strand, 6423315 - 6423216
Alignment:
Q  267 caatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggat 366  Q
    ||||||||||| ||||| ||||  |||||||||||||||||||||| |||| | ||   ||| ||||| | |||| ||||||||||||||||||||||||    
T  6423315 caatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggat 6423216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 6585261 - 6585330
Alignment:
Q  290 ttggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgtt 359  Q
    |||||||| |||||||||||| | |||||  |||||||||||||| | ||||||||||||||||||||||    
T  6585261 ttggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgtt 6585330  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 366
Target Start/End: Complemental strand, 6426585 - 6426510
Alignment:
Q  291 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggat 366  Q
    ||||||||||||| |||||||| ||||  |||||||||||||| || |||| ||||||||||| ||||||| ||||    
T  6426585 tggaggtgttgaatttgtcaaacacaagcattgatgatgaaactttttatgcgatctcaaagaattgttgtcggat 6426510  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 363
Target Start/End: Complemental strand, 14802429 - 14802338
Alignment:
Q  272 aactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgg 363  Q
    |||||| ||||| ||||  |||| |||||||| |||||||| |||||  |||||||||||||| | |||||||| ||||||| |||||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtgg 14802338  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 6394938 - 6394865
Alignment:
Q  291 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||||||||||||||| ||||   |||||||||||||  | | |||||||||||||| ||||||||||    
T  6394938 tggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtggg 6394865  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 361
Target Start/End: Complemental strand, 6410103 - 6410010
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 361  Q
    |||||||||| ||||| ||||  || |||||||||||| |||||| ||||   |||||||||||||  | |||||||||||||||| |||||||    
T  6410103 aatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgt 6410010  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 10579761 - 10579831
Alignment:
Q  291 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 361  Q
    |||||||||||||||||||| | |||||| |||||||| ||||| | |||  ||||||||||| |||||||    
T  10579761 tggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgt 10579831  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 6402929 - 6402861
Alignment:
Q  296 gtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    ||||||||||||||| | || ||  |||||||||||||| | |||||||||||||||| |||| |||||    
T  6402929 gtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtggg 6402861  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 6594620 - 6594704
Alignment:
Q  280 agtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||| ||||| ||||||||||| |||||||||| ||| |  |||||||||| ||| |   |||||||||||||| ||||||||||    
T  6594620 agttcccaaactggaggtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtggg 6594704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 14820778 - 14820694
Alignment:
Q  280 agtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||| |||| || |||||||||||||| ||||| |||||  ||||| |||||||| | ||| ||||||| |||| ||||||||||    
T  14820778 agttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtggg 14820694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 6416040 - 6415973
Alignment:
Q  291 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 358  Q
    |||||||||||||||||||||| |||||  || ||||| ||||  | |||||||||||||||| ||||    
T  6416040 tggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgt 6415973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 6596953 - 6597026
Alignment:
Q  291 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||||||||||||||||||  |||||  |||||||||||||| | || |  |||||||||| ||||| ||||    
T  6596953 tggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacactctacgctatctcaaagaattgttctggg 6597026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 360
Target Start/End: Complemental strand, 7119231 - 7119162
Alignment:
Q  291 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttg 360  Q
    |||||||||||||||||||| | || ||  |||||||||||||| |  |||||||||| |||| ||||||    
T  7119231 tggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttg 7119162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 360
Target Start/End: Complemental strand, 7131709 - 7131640
Alignment:
Q  291 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttg 360  Q
    |||||||||||||||||||| | || ||  |||||||||||||| |  |||||||||| |||| ||||||    
T  7131709 tggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttg 7131640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 351
Target Start/End: Original strand, 6589348 - 6589408
Alignment:
Q  291 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaa 351  Q
    |||||||||||||||||||||| |||||  || ||||| ||||| | ||| ||||||||||    
T  6589348 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaa 6589408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 12102361 - 12102321
Alignment:
Q  270 tgaactttcaagtttccaaattggaggtgttgaacttgtca 310  Q
    |||||||| ||||| ||||| ||||||||||||||||||||    
T  12102361 tgaactttgaagttcccaaactggaggtgttgaacttgtca 12102321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 32785774 - 32785856
Alignment:
Q  268 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaa 350  Q
    |||||||||| ||| | ||||| | |||||||||||||||||| | |||| ||||||||||||| || | |||||||||||||    
T  32785774 aatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 32785856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 44575529 - 44575587
Alignment:
Q  300 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 358  Q
    |||| |||||||| |||| | |||||||||| |||||||||||||||||||||||||||    
T  44575529 tgaatttgtcaaaaacaagagttgatgatgacacattgtatgtgatctcaaagagttgt 44575587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 364
Target Start/End: Original strand, 45245091 - 45245183
Alignment:
Q  272 aactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    |||||| ||||| | ||| | ||||||||||| |||||| ||||||   |||||||||||||| |  |||||||||||||||||||| |||||    
T  45245091 aactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtggg 45245183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 43277371 - 43277440
Alignment:
Q  180 gcatatccgaaggtattgttgaagttttaag---atgttgtaaaattactcatttgaacttgagatcttg 246  Q
    ||||||| ||| ||||||| |||||||||||   ||||||||||||||| ||||||||||||| ||||||    
T  43277371 gcatatctgaatgtattgtcgaagttttaaggagatgttgtaaaattacgcatttgaacttgacatcttg 43277440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 364
Target Start/End: Original strand, 1037653 - 1037762
Alignment:
Q  255 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 354  Q
    |||| ||||||  ||| |||||| ||||| |  |||| |||||||| ||||||||| | |||    |||||||||||||| | ||| ||||||||||||     
T  1037653 tgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaa 1037752  T
Q  355 ttgttgtggg 364  Q
    ||||||||||    
T  1037753 ttgttgtggg 1037762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 364
Target Start/End: Complemental strand, 39256 - 39185
Alignment:
Q  293 gaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    ||||||||||||||| ||   |||||  || ||||||||||| | ||||||||||||||||||||| |||||    
T  39256 gaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtggg 39185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 15092176 - 15092249
Alignment:
Q  291 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 364  Q
    ||||||||||||| |||||| | |||||  || ||||| ||||| | |||| ||||||||||| ||||||||||    
T  15092176 tggaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtggg 15092249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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