View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20262_low_34 (Length: 481)
Name: NF20262_low_34
Description: NF20262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20262_low_34 |
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| [»] chr8 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 8e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 355 - 481
Target Start/End: Complemental strand, 8541925 - 8541799
Alignment:
| Q |
355 |
tagagtagttaatgacgaattttgacaagtaataaagtagttatcgtctagattgtcattcaacttgctaatagtggaatttattgaaaataacttaatt |
454 |
Q |
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| T |
8541925 |
tagagtagttaatgacgaattttgataagtaataaagtagttatcgtctagattgtcgttcaacttgctaatagtggaatttaatgaaaataatttaatt |
8541826 |
T |
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| Q |
455 |
aaaagagatgaagtggtttgcaggatt |
481 |
Q |
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| T |
8541825 |
aaaagagatgaagtggtttgcaggatt |
8541799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 8542270 - 8542182
Alignment:
| Q |
13 |
aatatcaaagaatacaaaaataaattaattattattacccctaaaattgaagtgaaaatttatattaaaccttcaagctatcgttttac |
101 |
Q |
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| T |
8542270 |
aatataaaagaatacaaaaataaattaattattattacccctaaaattgaagtgaaaatttatattaaaccttcaagctatcgttttac |
8542182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 8542027 - 8541974
Alignment:
| Q |
258 |
cggtaaatactagggatttcataaggctttcaagccttcaaaccctagagatat |
311 |
Q |
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| T |
8542027 |
cggtaaatactagggatttcataaggctttcaagccttcaaaccctacagatat |
8541974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 473
Target Start/End: Complemental strand, 18446569 - 18446522
Alignment:
| Q |
426 |
tagtggaatttattgaaaataacttaattaaaagagatgaagtggttt |
473 |
Q |
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| T |
18446569 |
tagtggaatttattataaataacataattaaaagagataaagtggttt |
18446522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 451 - 481
Target Start/End: Complemental strand, 18179317 - 18179287
Alignment:
| Q |
451 |
aattaaaagagatgaagtggtttgcaggatt |
481 |
Q |
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| T |
18179317 |
aattaaaagagatgaagtggtttgcaggatt |
18179287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 28411612 - 28411542
Alignment:
| Q |
405 |
gattgtcattcaacttgctaat-agtggaatttattgaaaataacttaattaaaagagatgaagtggtttg |
474 |
Q |
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| T |
28411612 |
gattgccattcaactcgttaattagcggaatttattagaaataacaaaattaaaagagatgaagtggtttg |
28411542 |
T |
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